Sequence
atgc intronic sequence ATGC exonic sequencegtatgtcttacacttgtctggttgtttcttcacttcttttctttgtatcttcaatgattcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G24510.1 (Glycine max), 3'ss of exon 2
gtatgtcttacacttgtctggttgtttcttcacttcttttctttgtatcttcaatgattcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG
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---------------------gtatgtttcaactgtatacagttatgctttctttaa---atgttctggtattaaatgactactctgtgtttcagCTGCTGGTCTACAAGTTCTTCGGGACAATAACCTTATTCATCGAGACCTGAAACCACAG
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G37840.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtctta----cacttgtctggttgtttcttcacttcttttctttgtatcttcaatgat-tcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG
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gtaaattctagtggcacttacttactctctgttttgttgtttttcttggttgccagaaacatgttttgtaatctctgacgggttttattttatgtaacagCGGCCGGCTTACAAGTTCTTCGTGACAATAATATTATTCACCGAGATTTAAAGCCTCAG
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G37840.2 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtctta----cacttgtctggttgtttcttcacttcttttctttgtatcttcaatgat-tcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG-----------------------------------------
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gtaaattctagtggcacttacttactctctgttttgttgtttttcttggttgccagaaacatgttttgtaatctctgacgggttttattttatgtaacagCGGCCGGCTTACAAGTTCTTCGTGACAATAATATTATTCACCGAGATTTAAAGCCTCAGGTGTGTCTGATTCTCATTCCTTTCATTTCAATGATCTTCTG
upper sequence: Vv08s0007g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G53930.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtcttacacttgtctggttgtttcttcacttcttttctttgtatcttcaatgattcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG
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gtacaagtttgaaaaagattcttcatcatttactg-ttttgtttggatcagtagaatcacattctcattctttgtataaattttcggtgtaatagCGGCTGGCTTACAAGTTCTTCGTGACAATAATATCATTCACCGCGATTTAAAGCCTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352768670|gb|FQ467882.1|FQ467882EST: CTATGTAAGAGTTCCAGAAGCTACTGCGAAGCACTTCATGCAGCAGCTAG CGGCTGGTTTACAAGTTCGTCGTGATAATAATCTTATACATCGAGATCTAA
genomic: CTATGTAAGAGTTCCAGAAGCAACTGCAAAGCACTTCATGCAGCAGCTAGgtatgtctta ... catttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgtatcttcaatgattcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG
aatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtatgtcttacacttgtctggttgtttcttcacttcttttctttgtatcttcaatgattcatgtaatgacgttggtgaacttgtgcatttcacagCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC