1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atctgtttgcacatacaaaggcttcattatttgtttctgctgatatttgagttgttttagcttataatcccttcccaatttttgtgtggttgtcttacagTAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGTCAGGCCTTTTCATCCAGGAGAACATCTCTGTTGGTGCCTCCGGTGCACT
species | Vitis vinifera |
transcript | Vv08s0007g00470.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGTCTTTTGGTTATTGGGATTCGGCTTGAGCAAGAATTTGGTTTTG TAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGTEST: gi|161720330|gb|FC071183.1|FC071183
genomic: GTTGAGTCTTTTGGTTATTGGGATTCGGCTTGAGCAAGAATTTGGTTTTGgtatgtattc ... tgtcttacagTAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGT
EST: GTTGAGTCTTTTGGTTATTGGGATTCGGCTTGAGCAAGAATTTGGTTTTG TAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGTEST: gi|22011803|gb|BQ796837.1|BQ796837
genomic: GTTGAGTCTTTTGGTTATTGGGATTCGGCTTGAGCAAGAATTTGGTTTTGgtatgtattc ... tgtcttacagTAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGT
EST: G-TGAGTC--TTGG-TA-TGGGA-TCGGC-TGAGCAAGAA-TTGG-TTTG TAAAGG-TGGA-TGCTCTATGTCATCTCTGGATTGGGTGGTAGTCTGTTGT
genomic: GTTGAGTCTTTTGGTTATTGGGATTCGGCTTGAGCAAGAATTTGGTTTTGgtatgtattc ... tgtcttacagTAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGT
tttgagttgttttagcttataatcccttcccaatttttgtgtggttgtcttacagTAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGTCAGGCCTTTTCATCCAGGAGAACATCTCTGTTGGTGCCTCCGGTGCACT
ttgtctt CT-rich tract
ttttagcttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgtttgcacatacaaaggcttcattatttgtttctgctgatatttgagttgttttagcttataatcccttcccaatttttgtgtggttgtcttacagTAAAGGTTGGATTGCTCTATGTCATCTCTGGATTTGGTGGTAGTCTGTTGTCAGGCCTTTTCATCCAGGAGAACATCTCTGTTGGTGCCTCCGGTGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- ctgtttg
- - - - -cacatac
- - - - - - - - - - - - - - - - - -tctgctg