1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttaagatggcaagaattatgtattgtgattcttattttgttatgtaaaaggtgtactcctgattgttcagtcacttcccagtattcatacttagcagGCACTAAGAGTAAGACACTCGACGAGGATTAGCTGTAGATGTACTTTTGTGATCAAGTGGCTTCACCAAGACCTCAAAGGAGCAACATCAATTGTTCCAT
species | Vitis vinifera |
transcript | Vv08s0007g00110.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCATAAGTCACATTTTAAGACCCTCTCCTTTGATGCTATGGTGGAAAAG GCACTAAGAGTAAGACACTCGACGAGGATTAGCTGTAGATGTACTTTTGTG
genomic: CCCATAAGTCACATTTTAAGACCCTCTCCTTTGATGCTATGGTGGAAAAGgtattgtctc ... tacttagcagGCACTAAGAGTAAGACACTCGACGAGGATTAGCTGTAGATGTACTTTTGTG
tgtaaaaggtgtactcctgattgttcagtcacttcccagtattcatacttagcagGCACTAAGAGTAAGACACTCGACGAGGATTAGCTGTAGATGTACTTTTGTGATCAAGTGGCTTCACCAAGACCTCAAAGGAGCAACATCAATTGTTCCAT
tcctgat putative branch site (score: 3)
tattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaagatggcaagaattatgtattgtgattcttattttgttatgtaaaaggtgtactcctgattgttcagtcacttcccagtattcatacttagcagGCACTAAGAGTAAGACACTCGACGAGGATTAGCTGTAGATGTACTTTTGTGATCAAGTGGCTTCACCAAGACCTCAAAGGAGCAACATCAATTGTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - -gcaagaa
- - - - - - - - - - - - - - - - - - - - - - - gtaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctga