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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgtgattaccttcagacattttgttctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacagGAAGGACAGAAGCCATCTAAGATCATTAGCCCCAATCTAAGTGTTGGAGGTCCCATTAGGGCTAATGCTAGCAATGGAAACACACAAGTTTTCATTAATG

Basic information

species Vitis vinifera
transcript Vv07s0255g00100.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G25990.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------------------------------------------------------gtgaatgtgattaccttcagacatt--ttgttctggtattttgtttcataattgttttgaatggaacttgatgcttgttc---taaattttacagGAAGGACAGAAGCCATCTAAGATCATTAGCCCCAATCTAAGTGTTGGAGGTCCCATTAGGGCTAATGCTAGCAATGGAAACACACAAGTTTTCATTAATG
                                                                                                         |     | ||  ||  |    |  | ||| |  | || | ||  ||  |||  ||  ||   | |   || |||||    |  ||||| ||||||||||||||||| |  |  || ||||| ||  || | | |||||| |||||||| |   |  |||| ||||||||||||||||| |||||||||||||
gtatgtttaattttttttttattctttaatccgcgtgttagtagtattgttagttattgatgtggaagattcgaatccctaatctctcctctcccacttccctccaccactagtatttttgggaggtaatggttttttttttgtcttggatttttgagttttatctcattgtttgtttgtttgtgtggattttgcagGAAGGACAGAAGCCTTGCAGAATTATTAGTCCTCATTTGAATGTTGGGGGTCCCATCAAACCGGATGCAAGCAATGGAAACACACAGGTTTTCATTAATG

upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 3
------------------------------------------gtgaatgtga----ttaccttcagacattttgttctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacagGAAGGACAGAAGCCATCTAAGATCATTAGCCCCAATCTAAGTGTTGGAGGTCCCATTAGGGCTAATGCTAGCAATGGAAACACACAAGTTTTCATTAATG
                                          || | ||| |    ||       |    || |  ||       | || |  | |  |||    |   ||   ||   | || | |||||| |||||||||| |||||| | ||  || ||||| ||  || | | |||||| |||||||| |  ||  || | ||||||||||||||||| |||||||||||||
gtatgtttatttgttttatttgttagtaacttagtattgttagttattgttagtttttgttagggggagattcgaactcaccacctcttcctcattcttttcccctttcacc--attagtattgtgaattttgcagGAAGGACCGAAGCCTTGTAGAATTATTAGTCCTCATTTGAATGTTGGGGGTCCCATCAAAGCGGATTCAAGCAATGGAAACACACAGGTTTTCATTAATG

upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgaatgtgattaccttcagacattttgt-tctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacagGAAGGACAGAAGCCATCTAAGATCATTAGCCCCAATCTAAGTGTTGGAGGTCCCATTAGGGCTAATGCTAGCAATGGAAACACACAAGTTTTCATTAATG
||||    || ||  | | |   |||||  | | || | ||  ||  || ||||||   ||  |  |  ||      |     || ||||||||||| ||||||| | | |||| ||||| ||  |||| | |||||||||||| |||||  |  | |||||||| |||||||| ||||||||||| || |
gtgag---gaatatttactgttcttttgagttttgtgtcttagtttcta-ttgtttcttatatatatatatatgatgttggggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacagGAAGGACAGAAGCCATCTAAGATCATTAGCCCCAATCTAAGTGTTGGAGGTCCCATTAGGGCTAATGCTAGCAATGGAAACACACAAGTTTTCATTAATG
                                        ttctaaa  putative branch site (score: 2)
      tttcataattgtttt  TA-rich tract