Sequence
atgc intronic sequence ATGC exonic sequencegtcagatacaaacatgtgtatatatctatcagtctcagtctcatatcatctttatgatcatctctcaatgacccatcattaatatggaattttgtgtttgttttgagacagGTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTGTATGAGACGGTGGGGAGGATCCAAGGAGAGGCTCCGCTTACCTGAACAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110375844|gb|EC940864.1|EC940864EST: TCAACGTCACAACAGTGGATCATATGGTCCTCTACTCTTTCAGTGCCAAG GTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTG
genomic: TCAACGTCACAACAGTGGATCATATGGTCCTCTACTCTTTCAGTGCCAAGgtcagataca ... tttgagacagGTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTG
EST:
gi|110360490|gb|EC923633.1|EC923633EST: TCAACGTCACAACAGTGGATCATATGGTCCTCTACTCTTTCAGTGCCAAG GTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTG
genomic: TCAACGTCACAACAGTGGATCATATGGTCCTCTACTCTTTCAGTGCCAAGgtcagataca ... tttgagacagGTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcatctctcaatgacccatcattaatatggaattttgtgtttgttttgagacagGTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTGTATGAGACGGTGGGGAGGATCCAAGGAGAGGCTCCGCTTACCTGAACAA
cattaat putative branch site (score: 3)
tttgtttt putative PPT
attaatatggaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagatacaaacatgtgtatatatctatcagtctcagtctcatatcatctttatgatcatctctcaatgacccatcattaatatggaattttgtgtttgttttgagacagGTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTGTATGAGACGGTGGGGAGGATCCAAGGAGAGGCTCCGCTTACCTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG