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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccccactttttatttgaaaattccaagcatttaagcttcttataatttgcttaaaaatttctgttatttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAAATATA

Basic information

species Vitis vinifera
transcript Vv07s0151g00860.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055280|gb|FQ441878.1|FQ441878
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|27580560|gb|CB003255.1|CB003255
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351054424|gb|FQ450507.1|FQ450507
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|352790943|gb|FQ479936.1|FQ479936
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351054345|gb|FQ450428.1|FQ450428
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351053960|gb|FQ441726.1|FQ441726
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351038630|gb|FQ464496.1|FQ464496
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351041932|gb|FQ456142.1|FQ456142
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351044390|gb|FQ452942.1|FQ452942
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351056109|gb|FQ453571.1|FQ453571
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351057496|gb|FQ440090.1|FQ440090
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351044595|gb|FQ443126.1|FQ443126
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|27579662|gb|CB002357.1|CB002357
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|352790264|gb|FQ481463.1|FQ481463
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351054568|gb|FQ462675.1|FQ462675
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|352798862|gb|FQ478497.1|FQ478497
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|32250149|gb|CD715968.1|CD715968
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351032736|gb|FQ462450.1|FQ462450
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351039837|gb|FQ464875.1|FQ464875
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351037996|gb|FQ460738.1|FQ460738
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351044516|gb|FQ443047.1|FQ443047
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351054394|gb|FQ450477.1|FQ450477
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|352789760|gb|FQ478575.1|FQ478575
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351054311|gb|FQ450394.1|FQ450394
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351037499|gb|FQ460698.1|FQ460698
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351039712|gb|FQ464750.1|FQ464750
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351038914|gb|FQ457589.1|FQ457589
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351039029|gb|FQ457704.1|FQ457704
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351057344|gb|FQ454026.1|FQ454026
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351055936|gb|FQ453397.1|FQ453397
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
EST: gi|351053868|gb|FQ441634.1|FQ441634
EST:     TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAG                         GAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA
genomic: TTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGCGGAGgtatgcccca ... tttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaagcatttaagcttcttataatttgcttaaaaatttctgttatttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAAATATA
                                    tttctgttatttct  CT-rich tract
                  ttataatttgcttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgccccactttttatttgaaaattccaagcatttaagcttcttataatttgcttaaaaatttctgttatttctggcagGAAAATACTCAGAGGAGCCAAGCCCTTCTGATGAGTGGTTTGAGAAAGGAAATATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA