1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttgtcatcattttgaccagcaacattcagtttgtttctgcagaaaatttctcatttatactcctaccaaacatcacctgattgttttaaatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTTTGTATGTTTTGCTGACAAATTTGGTGTTGTTTGGGCCCTGAATCTGGAT
species | Vitis vinifera |
transcript | Vv07s0151g00790.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGT GTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTTEST: gi|351025295|gb|FQ434308.1|FQ434308
genomic: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGTgtaagttctt ... aatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTT
EST: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGT GTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTTEST: gi|349826552|gb|FQ418643.1|FQ418643
genomic: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGTgtaagttctt ... aatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTT
EST: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGT GTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTTEST: gi|122690606|gb|EC954888.1|EC954888
genomic: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGTgtaagttctt ... aatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTT
EST: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGT GTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTT
genomic: AAACTAGTCAAGATTTGGAATGCAAATTCTTGGCACTGCATTAGTACTGTgtaagttctt ... aatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTT
aaatttctcatttatactcctaccaaacatcacctgattgttttaaatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTTTGTATGTTTTGCTGACAAATTTGGTGTTGTTTGGGCCCTGAATCTGGAT
acctgat putative branch site (score: 4)
attgttttaaatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtcatcattttgaccagcaacattcagtttgtttctgcagaaaatttctcatttatactcctaccaaacatcacctgattgttttaaatgtaacagGTGCTCTGAGAAGAGAGTGAGTGCAGTTGCTATAAGTAAGGATGGCCTGTTTGTATGTTTTGCTGACAAATTTGGTGTTGTTTGGGCCCTGAATCTGGAT
- - gtcatca
- - - - - - - - -ccagcaa
- - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctga