Sequence
atgc intronic sequence ATGC exonic sequence...tttttaggaagagaatcagctacctgctgtgttttaagtatgaaaaatggcttcataatgcccctgactagactttttgatgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G34470.1 (Glycine max), 3'ss of exon 2
tttttaggaagagaatcagct-acctgctgtgttttaagtatgaaaaatggcttcataatgcccctgactagactttttga--tgtttttgct-----cttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
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------gaaatatgatcaactgatcaagtatgctgttggtatttttgctatct-catgat-tttgtatttggtgtttctgaattctctttatttgatgcttttgaaagGTAATGGTTTCTGCAAAAGAAGAGCCAGATTGTCCCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGATCGTGACC
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G31670.2 (Glycine max), 3'ss of exon 2
tttttaggaagagaatcagctacctgc-tgtgttttaagtatgaaaaatggcttcataatgcccctgactagact---ttttgatgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
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----taaaatctgaaatatgaacaagcatgtttttggtatttttgagatctcatcattttgtatttagtgtttctgaattctgtttatttgatacttttgaaagGTAATGGTTTCTGCAAAAGAAGAACCAGATCGTCCCATACCACCTGCTATTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACC
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G15850.1 (Glycine max), 3'ss of exon 1
tttttaggaagagaatcagctacctgctgtgttttaagtatgaaaaatggcttcataatgcccctgacta----gactttttga----tgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
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----taaaattagatc--gctataatttgaaatttagctgtttttggtg--ttcatgaaggtcctgcttatgttgtgtttctgaattctccttttatgcttttaaaagGTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTTGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAACGTGGACCCTCATC
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G03910.2 (Glycine max), 3'ss of exon 2
-tttttaggaagagaatcagctacct-gctgtgttttaagtatgaaaaatggcttcataatgcccctgactagactttttgatgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
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ttagctcgctttaaaatttgatatttagctgtttttgctgt-tcataaaggacatgcttacgttgtggttctgaattctcctt-ctttcatgctattaaaagGTAATGGTTTCTGCGAAAGAAGAGCCAGATTGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTAGACCCTCATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857700|gb|DT006755.1|DT006755EST: AGGCTCGCATAAAGATTCTCGATGGCCCTCCTGGAACATCTGAAAGAGCT GTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATT
genomic: AGGCTCGCATAAAGATTCTCGATGGTCCTCCTGGAACATCTGAAAGAGCTgtgagtttct ... cttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATT
EST:
gi|110400230|gb|EC966783.1|EC966783EST: AGGCTCGCATAAAGATTCTCGATGGCCCTCCTGGAACATCTGAAAGAGCT GTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATT
genomic: AGGCTCGCATAAAGATTCTCGATGGTCCTCCTGGAACATCTGAAAGAGCTgtgagtttct ... cttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatggcttcataatgcccctgactagactttttgatgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
tgtttttgctctttt CT-rich tract
tttttgatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttaggaagagaatcagctacctgctgtgttttaagtatgaaaaatggcttcataatgcccctgactagactttttgatgtttttgctcttttgaaagGTAATGGTTTCTGCGAAGGAAGAGCCTGATGCCCCAATTGCTCCTGCTATTGATGGTTTGCTGAGGGTTCACAAATGTATTATGGATGTAGAGAGTGATG
- - - - aagagaa
- - - - - - - - - - - cctgctg
- - - - - - - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -tggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgac