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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggatatcattgtaaagccagattagaaataaacagaattcttctctgaaatgaattcatatttcatgctttttatgactgttgcttgaattttaatgattttatccgtagATTGTGGACCCACACACAGTTGACGTGGATGGAAAACTATATACAGCAAGGCACATACTAATTGCAGTTGGGGGCCGCCCCTTCATTCCTGAAATTCCTG

Basic information

species Vitis vinifera
transcript Vv07s0141g00390.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712070|gb|FC061442.1|FC061442
EST:     ATTAATTGAATGCCGTGGAAAG                         ATTGTGGACCCACACACAGTTGACGTGGATGGAAAACTATATACAGCAAGG
genomic: ATTAATTGAAGGCCGTGGAAAGgttggatatc ... ttatccgtagATTGTGGACCCACACACAGTTGACGTGGATGGAAAACTATATACAGCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatatttcatgctttttatgactgttgcttgaattttaatgattttatccgtagATTGTGGACCCACACACAGTTGACGTGGATGGAAAACTATATACAGCAAGGCACATACTAATTGCAGTTGGGGGCCGCCCCTTCATTCCTGAAATTCCTG
                                  ttttaat  putative branch site (score: 3)
                                           ttttatcc  putative PPT
                             ttgaattttaatgatt  TA-rich tract