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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctttttgctgaggtgctgaccttctgatgaaggtgatgcaatgacaatttttgtgtgtgtgtttgctcttttctacttcctaattttcggattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAGTTGTTAGCCTCTGCCAACTCTAGCAATAGTAAAGAG

Basic information

species Vitis vinifera
transcript Vv07s0130g00310.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712155|gb|FC061527.1|FC061527
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351021979|gb|FQ437766.1|FQ437766
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351049571|gb|FQ429193.1|FQ429193
EST:     ACTCCTCTCAGCAATCGTCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349826636|gb|FQ418727.1|FQ418727
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349817579|gb|FQ407369.1|FQ407369
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351018506|gb|FQ424613.1|FQ424613
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349808016|gb|FQ402407.1|FQ402407
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|37184961|gb|CF604314.1|CF604314
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAAAGAAGAAGCCGAGAAATATGAAAGAGCGTTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351019477|gb|FQ429612.1|FQ429612
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349816072|gb|FQ399303.1|FQ399303
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATACCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351041001|gb|FQ443777.1|FQ443777
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349816179|gb|FQ403675.1|FQ403675
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349815328|gb|FQ400483.1|FQ400483
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351034264|gb|FQ448061.1|FQ448061
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAAAGAAGAAGCCGAGAAATATGAAAGAGCGTTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|161717594|gb|FC066898.1|FC066898
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|30129333|gb|CB914672.1|CB914672
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349827064|gb|FQ421337.1|FQ421337
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAAAGAAGAAGCCGAGAAATATGAAAGAGCGTTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349829875|gb|FQ422188.1|FQ422188
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349808752|gb|FQ406602.1|FQ406602
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349829450|gb|FQ419982.1|FQ419982
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCCTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|110729851|gb|EE106263.1|EE106263
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCGG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349807552|gb|FQ401917.1|FQ401917
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|351017764|gb|FQ436117.1|FQ436117
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAAAGAAGAAGCCGAGAAATATGAAAGAGCGTTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
EST: gi|349809458|gb|FQ411956.1|FQ411956
EST:     ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAAT                         GCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG
genomic: ACTCCTCTCAGCAATCATCTATGAACCCATTCATATCTTTTCTTATAAATgtgagctaag ... gattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttttgtgtgtgtgtttgctcttttctacttcctaattttcggattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAGTTGTTAGCCTCTGCCAACTCTAGCAATAGTAAAGAG
                                 tcctaat  putative branch site (score: 2)
                                    taatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctttttgctgaggtgctgaccttctgatgaaggtgatgcaatgacaatttttgtgtgtgtgtttgctcttttctacttcctaattttcggattttgcagGCAGCATGTAATGAAGAAGCCGAGAAATATGAAAGAGCATTTATTCTCCAGTTGTTAGCCTCTGCCAACTCTAGCAATAGTAAAGAG

- - -ttgctga
- - - - - - - -gctgacc
- - - - - - - - - - - - ctgatga
- - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg