Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714657|gb|FC063892.1|FC063892EST: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
EST:
gi|161713635|gb|FC062543.1|FC062543EST: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
EST:
gi|161705588|gb|FC055767.1|FC055767EST: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
EST:
gi|161715493|gb|FC069056.1|FC069056EST: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCT TTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
genomic: TGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtattt ... tttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtatgatgattttggtgaagccctgtttgatgcatgatttttgtttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAAGTCGGAGACGAAGACCCCTAGTGGGTTAGTGGCACGTCCGGTGCTGACC
gtttgat putative branch site (score: 5)
tttttgttt putative PPT
atttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtatttcagaatttttgttatgttttttgctggtgggtttagatgtgtatgatgattttggtgaagccctgtttgatgcatgatttttgtttgcaatagTTATGTGCCGGGTCTGGACAAAGGCAAGGGTCTGTACTTCTTGTTTGTGAAGTCGGAGACGAAGACCCCTAGTGGGTTAGTGGCACGTCCGGTGCTGACC
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