Sequence
atgc intronic sequence ATGC exonic sequencegtgagcttcttctgaaatcaattatatctaatatttattatgttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G22420.1 (Glycine max), 3'ss of exon 2
gtgagct--tcttctgaaatcaattatatctaatattt--attatgttaaa--acttaaaag---gttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT
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attggttgacaatgtaaaaaaaattatcctaagtatataaattaaactccttcatttaaaaatatatttgcttacctgtgaattgtgatcatacccgcagGTGTTCAACCAAGCGATTACGTTGTACCTGATGAAGTAAAAGCTGCAGGTTTCCAAATCTGTGCTGAAGAATTGGGGTCTATTGTTGAAGGCCATGACGT
upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G17450.1 (Glycine max), 3'ss of exon 2
-------gtgagcttcttctgaaatcaattatatctaatatttattatgttaaaacttaaaa--ggttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT
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gttgacaatgtaaaactttttatcctaacaatgtatagaaattaaactcctacatttaaaaatcaatttgtttacctgtgaattgtgatcatacccgcagGTGTTCAACCGAGCGATTATGTGTTACCTGACGAAGTAAAAGCTGCGGGTTTCCAAATCTGTGCTGAAGAACTGGGGTCTATTGTTGAAGGCCATGACGT
upper sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcttcttctgaaatcaattatatctaatatttattatg--ttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT
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gtgagtttata-tgtgatcaaagttg-ctgatttgtgtcaaagtttcgatttttgtttgtttgtttgtttgtttatgtgagtttttgttgtagGTGTTTCTCCAAGTGACTACACTGTCCCTGAAGATGTCAAAGCTGCTGGCTTTGAGATTTGTGCTGACGAATTAGGATCAATTGTTGAAAGTCATGATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatgttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT
ttaaaacttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcttcttctgaaatcaattatatctaatatttattatgttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT