Sequence
atgc intronic sequence ATGC exonic sequence...cttcaaaatacccaacttcttatgcttagatctttctcttcgcccaaacaacactctttcacagtgtcttacctcatgaactcatgtgggttgtccccagAAACTGCTCTATCTGCATCACGGAAGATACAGTTTGAAACCCCAGAAAGAGCAGACTCCGTCCTCGCACTGCTTAGAAATTATGGATGCACCAATAGCCA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacaacactctttcacagtgtcttacctcatgaactcatgtgggttgtccccagAAACTGCTCTATCTGCATCACGGAAGATACAGTTTGAAACCCCAGAAAGAGCAGACTCCGTCCTCGCACTGCTTAGAAATTATGGATGCACCAATAGCCA
gtcttac putative branch site (score: 3)
ttgtcccc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttcaaaatacccaacttcttatgcttagatctttctcttcgcccaaacaacactctttcacagtgtcttacctcatgaactcatgtgggttgtccccagAAACTGCTCTATCTGCATCACGGAAGATACAGTTTGAAACCCCAGAAAGAGCAGACTCCGTCCTCGCACTGCTTAGAAATTATGGATGCACCAATAGCCA
- tcaaaat
- - - - -acccaac
- - - - - - - - - cttatgc
- - - - - - - - - - - - - - - - - tctcttc
- - - - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgg