1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacagattgattgttttgtaattatatgcaaccagatattgctgtttttattttacatgaaactagatcacctttatatgtttttaatgtgttaatggcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGGCCAACAAGTGCCTCTAAGTGGAAAGGGATCTCTTTCAGGAGGTGTGCG
species | Vitis vinifera |
transcript | Vv07s0095g00730.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAA ATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGEST: gi|71883002|gb|DT032057.1|DT032057
genomic: GGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAAgtacagattg ... gcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
EST: GGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAA ATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGEST: gi|110387586|gb|EC952267.1|EC952267
genomic: GGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAAgtacagattg ... gcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
EST: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAA ATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGEST: gi|110392715|gb|EC957006.1|EC957006
genomic: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAAgtacagattg ... gcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
EST: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAA ATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGEST: gi|110403049|gb|EC964134.1|EC964134
genomic: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAAgtacagattg ... gcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
EST: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAA ATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGEST: gi|110700706|gb|EE077594.1|EE077594
genomic: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAAgtacagattg ... gcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
EST: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAA ATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
genomic: TGACAAGTGGGAGCATGATCTTTATGAGGATGGTGAAACTCAGATTTCAAgtacagattg ... gcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTG
ttacatgaaactagatcacctttatatgtttttaatgtgttaatggcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGGCCAACAAGTGCCTCTAAGTGGAAAGGGATCTCTTTCAGGAGGTGTGCG
tgttaat putative branch site (score: 3)
tttatatgtttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagattgattgttttgtaattatatgcaaccagatattgctgtttttattttacatgaaactagatcacctttatatgtttttaatgtgttaatggcatgtgaagATCGGAAAGTTGGTGCTAGAGATCTTCGTTTGAAGCTTCAAAAGAAGGTTGGCCAACAAGTGCCTCTAAGTGGAAAGGGATCTCTTTCAGGAGGTGTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA