Sequence
atgc intronic sequence ATGC exonic sequence...atatggtcatgaaatggctctacatcttagcactcaccctgcagttcttcatcacttttgctgtctatctgaccatttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G834205_T01 (Zea mays), 3'ss of exon 2
-atatggtcatgaaatggctctacatcttagcactcaccctgca---gttcttcatcacttttgctgtctatctgaccatttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
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catatgtttttaaattaatt--agctcacattacataatgtgcgaatgtgtttttatggttaagctatagtcttgat--tcagattcacttctatttgattcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G074764_T01 (Zea mays), 3'ss of exon 3
atatggtcatgaaatggctctacatcttagcactcaccctgcagttcttcatcacttttgctgtctatctgaccatttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
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-----aaaattaattagctc-acattacataatgtgtgaatgtgttttttatgg-ttaagctatagtcttgat--tcagattcacttctatttgtttcaactattggagATGCTTCTGAATAATTACGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G33150.1 (Glycine max), 3'ss of exon 4
atatggtcatgaaatggctctacatcttagca---ctcaccctgcagttcttcatcac-ttttgctgtctatctgaccatttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
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-tgaattttctaaatagtttttacctacaccatacctgaaatggagaagattgattatgtgattttcttttcttgaatattta--tattacttgattttc-tagTTGCTGGAAATGTTGATGAACAATATTGGAGATCGTGTTCACCAGCAGGTGATTGATACAGGAATTATTCCTATTCTTGTGAAAATTGTGAAGAAAAAA
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G63640.1 (Arabidopsis thaliana), 3'ss of exon 4
-----atatggtcatgaaatggctctacatcttagca-ctcaccctgc-agttcttcatcacttttgctgtctatctgacc---atttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
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gtaggttgtggtccagatctatcg-tatacagtagaatcatgctttatgagaatgtcatacttttgaacgttttggtaacttaaaactgttgttttgcttgttcttgcagTTGCTAGAGATGTTGATGAATAATATTGGAGAGAATATTCATAAGCAAGTTATAGATACAGGTGTACTCCCTACGCTTGTGAAGATAGTAAAGAAAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcatcacttttgctgtctatctgaccatttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
tttttgc CT-rich tract
atttgattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatggtcatgaaatggctctacatcttagcactcaccctgcagttcttcatcacttttgctgtctatctgaccatttgattagcatttgatttttgcagTTATTGGAGATGTTGATGAATAATATTGGAGAACCTGTTCACAGACAGGTGATTGATAATGGGCTCCTCCCTATACTAGTGAAGATAGTAAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - ggtcatg
- - - - - - - - -ctctaca
- - - - - - - - - - - - - - - - ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg