Sequence
atgc intronic sequence ATGC exonic sequencegtggactaatggatactggctaaatagttaatattgccatcaatgtgcttgatcagaatggttactattgtgtctatttcatttctgcagtggtaaccttgctgatttacggtattatgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G046846_T01 (Zea mays), 3'ss of exon 3
----------------------------------------gtggactaatggatactggctaaatagttaatattgccatcaatgtgcttgatcagaatggttactattgtgtctatttcatttctgcagtggtaaccttgctgatttacggtattatgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA
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gttagtgaataatctctgattctttttataaactataacaattgtctgaaccat-ttgtttattttatttatctagc-atcaacctggttatatagaagaaatgtacttcaacttgtttttatatgcttgtagttacctgaagtttttat----ttggtccaacagGGAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCACAACTTGGACCGCTACTTTGATAA
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G00670.1 (Glycine max), 3'ss of exon 2
gtggactaatggatactggctaaatagttaatattgccatcaatgtg-cttgatcagaatggtt----actattgt-gtctat--ttcatttctgcagtggtaacct-tgctgatttacggtattatgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA
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gta-actattgaattaagtcaaattcctaactaggggggcttctgtttcataacaaggccaactttaaactattttagtttaccactactttataaaatgctaaactgtgtgtgattatgat-ttatgtttccagGGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G33040.1 (Glycine max), 3'ss of exon 2
gtgg-actaatggatactggctaaatagttaatatt---gccatcaatgtgcttgatcagaatggttactattgt-gtctatttca--tttctgcagtggtaaccttgctgatttacggtattatgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA
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gtaacactattgaat-taaatcaaattcctaacaaggggggcttctgttt-catgacctgaccaacaactattttagtttaccaggactttataaaatgataaactttatgtgattttgatttatgtttccagGGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718502|gb|FC069286.1|FC069286EST: GTGGCGGACAAGAG GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTG
genomic: GTGGCGGACAAGAGgtggactaat ... atgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctatttcatttctgcagtggtaaccttgctgatttacggtattatgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA
tgttttc CT-rich tract
tattatgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggactaatggatactggctaaatagttaatattgccatcaatgtgcttgatcagaatggttactattgtgtctatttcatttctgcagtggtaaccttgctgatttacggtattatgttttcagGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC