1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacttttttttttttgttgttattttactgaaggcaggattgggaagcatcgatttgattttctttttccttctctttatttttgggtgaaaattgacagTGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAG
species | Vitis vinifera |
transcript | Vv07s0031g02960.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTA TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTAEST: gi|161718353|gb|FC065012.1|FC065012
genomic: AGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTAgtaagtttta ... aaattgacagTGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTA
EST: AGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTA TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTAEST: gi|294965011|gb|GW838814.1|GW838814
genomic: AGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTAgtaagtttta ... aaattgacagTGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTA
EST: AGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTA TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTAAAGCCCCTGCTA
genomic: AGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTAgtaagtttta ... aaattgacagTGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTA
agcatcgatttgattttctttttccttctctttatttttgggtgaaaattgacagTGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAG
atttgat putative branch site (score: 5)
atttgattttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttttttttttttgttgttattttactgaaggcaggattgggaagcatcgatttgattttctttttccttctctttatttttgggtgaaaattgacagTGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAG
- - - - - - - - - - - - - - -gaaggca
- - - - - - - - - - - - - - - - - - ggattgg