Sequence
atgc intronic sequence ATGC exonic sequencegtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G33010.1 (Glycine max), 3'ss of exon 2
gtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGC-GCTGGACTCTTCTCCA
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-aaacatagggtaggatttaattttcccttaatacaaccaacatattcagtcaattaatctttgtgc-caaatgttggcattggatct---taatttgtgaatagGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTCTTTCAGGCAGTGTCCCATGGTTCAGCATGATGGTATTAGGGAAAAAGCTGAAATTGTTTCA-
upper sequence: Vv07s0031g02950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ32860 (Selaginella moellendorffii), 3'ss of exon 2
gtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA
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---------------------------gtgagtatacaaatcaag--catttcttatccccaatctatactcgattaaattgacaaacattgtgtgaattccaagGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
upper sequence: Vv07s0031g02950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ14602 (Selaginella moellendorffii), 3'ss of exon 2
gtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA
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-------------------------------gtgagtatacaaaatcaagcatttcttatct------ccaatc-tatactgacaaacattgtgtgaatttcaagGTCTCGTGCAAGGGTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA
gactgat putative branch site (score: 3)
atgtaaataatgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA