Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713294|gb|FC064024.1|FC064024EST: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGG CTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAG
genomic: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGGgtacgattgt ... gactttgcagCTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAG
EST:
gi|222357007|gb|GH717869.1|GH717869EST: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGG CTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAG
genomic: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGGgtacgattgt ... gactttgcagCTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAG
EST:
gi|161708027|gb|FC056076.1|FC056076EST: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGG CTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAG
genomic: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGGgtacgattgt ... gactttgcagCTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAG
EST:
gi|37185841|gb|CF605194.1|CF605194EST: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGG CTTGACGATTGGGTCTTATGTCGAATATACAACAAG
genomic: ATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGGgtacgattgt ... gactttgcagCTTGACGATTGGGTCTTATGTCGAATATACAACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagaaaaagagtgatggttctttttattgatatatattattattgactttgcagCTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAGAAACAGCACACCTTTGATCAAAAGTCAATGAAATATCCAGAACTTGAAG
tattgac putative branch site (score: 2)
ttctttttattgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgattgtaattctatactacattaaagatatttatttattatttaaaaaaaaaagaaaaagagtgatggttctttttattgatatatattattattgactttgcagCTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAGAAACAGCACACCTTTGATCAAAAGTCAATGAAATATCCAGAACTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG