1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatttgctggccctttttggagtaaaaaagtgctgccatacctttatttggtgatcatttctatgggttgctatttcatggttattttatttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCGGATATTGAATCTAAGATTGAGCTCATTAAAACACTTAACAGTGTGTCTG
species | Vitis vinifera |
transcript | Vv07s0031g01970.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAACGACCAGATTGTTCTTTTATCAAAACGGCGTGGCCAGCTTAAACAG GCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCGEST: gi|27583566|gb|CB006261.1|CB006261
genomic: TCAACGACCAGATTGTTCTTTTATCGAAACGGCGTGGCCAGCTTAAACAGgtaaacgaaa ... ttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCG
EST: TCAACGACCAGATTGTTCTTTTATCAAAACGGCGTGGCCAGCTTAAACAG GCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCGEST: gi|349825795|gb|FQ423090.1|FQ423090
genomic: TCAACGACCAGATTGTTCTTTTATCGAAACGGCGTGGCCAGCTTAAACAGgtaaacgaaa ... ttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCG
EST: TCAACGACCAGATTGTTCTTTTATCAAAACGGCGTGGCCAGCTTAAACAG GCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCGEST: gi|161712574|gb|FC062176.1|FC062176
genomic: TCAACGACCAGATTGTTCTTTTATCGAAACGGCGTGGCCAGCTTAAACAGgtaaacgaaa ... ttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCG
EST: TCAACGACCAGATTGTTCTTTTATCGAAACGGCGTGGCCAGCTTAAACAG GCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCG
genomic: TCAACGACCAGATTGTTCTTTTATCGAAACGGCGTGGCCAGCTTAAACAGgtaaacgaaa ... ttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCG
atttggtgatcatttctatgggttgctatttcatggttattttatttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCGGATATTGAATCTAAGATTGAGCTCATTAAAACACTTAACAGTGTGTCTG
ttttattttt CT-rich tract
tatttcatggttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgctggccctttttggagtaaaaaagtgctgccatacctttatttggtgatcatttctatgggttgctatttcatggttattttatttttgcacagGCTGTAACTGCAATGGTCCAGCAAGCTATGCAGTATATTGACCAGACACCGGATATTGAATCTAAGATTGAGCTCATTAAAACACTTAACAGTGTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - ctggccc
- - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - -gctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg