Sequence
atgc intronic sequence ATGC exonic sequence...attggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G15250.1 (Glycine max), 3'ss of exon 1
attggaaattttgtgttcacacatttatctgccttaggagtagcttc-----tctgtga-gcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
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--atgtaattttatggtttctctgattccaggtaatagattagttttgagcttctgcactactcccgagttctaacatcgta---aatcatat-accattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCTTTCTTAAGTGGCTGGGATATATCCAAACCTCCCACCTTCCCTTACCTGA
upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G31940.1 (Glycine max), 3'ss of exon 3
attggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatc--------ttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
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------aatgtaatgttatggtttctctgattccaggtaatagattattttggagcttctaca--ctactcctgagttctaacattgcaaatcataactattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCTTTCTTAAGTGGCTGGGATATGTCCAAACCTCTCACCTTCCCTTACCTGA
upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G39590.1 (Glycine max), 3'ss of exon 1
-------attggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
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tttctttatatgtaactt-gtaaggctacagatgattgcttctgaa----cttctggacca-ctcctgaatcctgacattctatatcat-ataatgctattatgcagCTACAACTTTAACTGGTCTGCATTTTGCCACGACAACCTTGTTGACACTCATTCTTAAATCACTGGGATATATCCAGACCTCTCATCTTCCAGTATCTGA
upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G15280.2 (Glycine max), 3'ss of exon 2
at-tggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
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atatgtaacttgtaaggctacagatggttgcttctgaagtctgaacttctggaccattcctgaattctgacattctatatcat-ataatgctattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCATTCTTAAATCGTTGGGATATATCCAGACCTCTCATCTTCCATTATCTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34544353|gb|CF512585.1|CF512585EST: AATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTG CGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTG
genomic: AATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatgtccct ... tatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTG
EST:
gi|110721721|gb|EE099039.1|EE099039EST: AATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTG CGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTG
genomic: AATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatgtccct ... tatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctgtgagcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
tcttgtt CT-rich tract
ttatatatactaagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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attggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatcttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
attggaaa
- - - - - - - - tcacaca
- - - - - - - - - - - - - -tctgcct