Sequence
atgc intronic sequence ATGC exonic sequencegtcagtccccattacaagtgtgaagttctgggaaagtgctactcaaacattagccacatctacaaacccatgcatacatgtacatgaataatgtctatctgtatactgccttaaagatccactcatttgttaaatttggctggaaaataaatagtatcatgttccaacatttgtgcaccagACATCTCTTCGGGAGCTGACAACCCTTGGAATGAAGAATGCGGAAAACCTTGCAATTCCAAGTGTTAGAAATGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G004352_T01 (Zea mays), 3'ss of exon 2
gtcagtccccattacaagtgtgaagttctgggaaagtgctactcaaacattagccacatctacaaacccatgcatacatgta-catgaataatgtctatctgtatactgccttaaagatccactcatttgttaaatttggctggaaaataaatagtatcatgttccaacatttgtgcaccagACATCTCTTCGGGAGCTGACAACCCTTGGAATGAAGAATGCGGAAAACCTTGCAATTCCAAGTGTTAGAAATGAT
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----------gtcagtgctgt-atcttctcaggcatcaatgattgagcgct--tcgtgtttgcagg---atgcgtactcctgtcatgcgttttgctcgtgcaatttttacaatgcagtagcatttgatggttgtgtctggctctgattgattctaactgatgagcctgcattc-tgaaacagACATCTCTACGGGAGCTCACTACCCTTGGAATCAAGAATGCTGAGAATTTAGCAATTCCAAGTGTTAGAAATGAT
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G14970.1 (Glycine max), 3'ss of exon 2
gtcagtcccca-ttacaagtgtgaagttctgggaaagtgctactcaaacattagccacatctacaaacccatgcatacatgtacatgaataatgtctatctgtatactgccttaaagatccactcatttgtta---aatttggctggaaaataaatagtatcatgttccaacatttgtgcaccagACATCTCTTCGGGAGCTGACAACCCTTGGAATGAAGAATGCGGAAAACCTTGCAATTCCAAGTGTTAGAAATGAT
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gtcagtctccaattacaaatgtg--------gcaaagtgacaactaaacattaagctc-tcatcaaccattcttggacatg-gcatccatcatgtatacctgtcca-tgcttccactacttcttcacatgtaagctaattcatcactcatacaagt--tttcaccgttcaaattttgtgtaccagACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttaaatttggctggaaaataaatagtatcatgttccaacatttgtgcaccagACATCTCTTCGGGAGCTGACAACCCTTGGAATGAAGAATGCGGAAAACCTTGCAATTCCAAGTGTTAGAAATGAT
aaaataaatagtatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtccccattacaagtgtgaagttctgggaaagtgctactcaaacattagccacatctacaaacccatgcatacatgtacatgaataatgtctatctgtatactgccttaaagatccactcatttgttaaatttggctggaaaataaatagtatcatgttccaacatttgtgcaccagACATCTCTTCGGGAGCTGACAACCCTTGGAATGAAGAATGCGGAAAACCTTGCAATTCCAAGTGTTAGAAATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA