1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagagatgagattcattcaacctctgtgtctgaattcatactggattaatgggatcaataggatgatggttttaatggagcttaagaattaatgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTCAAACTCATCAACGCCAAGAACACCATGGAAATCGGCGTTTACACCGGC
species | Vitis vinifera |
transcript | Vv07s0031g00350.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|71859221|gb|DT008276.1|DT008276
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|37185179|gb|CF604532.1|CF604532
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|71857191|gb|DT006246.1|DT006246
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|71858580|gb|DT007635.1|DT007635
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|352785883|gb|FQ475886.1|FQ475886
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCAGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|30128852|gb|CB914191.1|CB914191
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|110728674|gb|EE104447.1|EE104447
genomic: GAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|71855811|gb|DT004866.1|DT004866
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|110701151|gb|EE078431.1|EE078431
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|37189880|gb|CF609229.1|CF609229
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|71856551|gb|DT005606.1|DT005606
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|29782008|gb|CB346952.2|CB346952
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTEST: gi|30124789|gb|CB910128.1|CB910128
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
EST: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTG GAACATCATGACGACCTCAGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
genomic: GAGCCGAAGCCCATGAAAGAGCTGCGAGAGTTGACGGCAAAACACCCCTGgtgagagatg ... atgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCT
taatgggatcaataggatgatggttttaatggagcttaagaattaatgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTCAAACTCATCAACGCCAAGAACACCATGGAAATCGGCGTTTACACCGGC
aattaat putative branch site (score: 3)
ttaagaattaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagatgagattcattcaacctctgtgtctgaattcatactggattaatgggatcaataggatgatggttttaatggagcttaagaattaatgatgacagGAACATCATGACGACCTCGGCTGATGAAGGGCAGTTCTTGAACATGCTGCTCAAACTCATCAACGCCAAGAACACCATGGAAATCGGCGTTTACACCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA