1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgatgccccactgatgtaatggttttgattatgtatttatcattttccaatacgggattttcttggccctgatgtagttactgcggaattttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT
species | Vitis vinifera |
transcript | Vv07s0005g05520.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|77588015|gb|DV223218.1|DV223218
genomic: AAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|71863932|gb|DT012987.1|DT012987
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|110698327|gb|EE075718.1|EE075718
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|110685770|gb|EE062781.1|EE062781
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|110684760|gb|EE062403.1|EE062403
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|33403461|gb|CF209088.1|CF209088
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|110389509|gb|EC954352.1|EC954352
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|71863860|gb|DT012915.1|DT012915
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAAEST: gi|294964497|gb|GW838300.1|GW838300
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
tccaatacgggattttcttggccctgatgtagttactgcggaattttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT
ccctgat putative branch site (score: 4)
ttttgttttc putative PPT
aattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgccccactgatgtaatggttttgattatgtatttatcattttccaatacgggattttcttggccctgatgtagttactgcggaattttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -ccccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttactgc