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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttgttatttacttttcttatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT

Basic information

species Vitis vinifera
transcript Vv07s0005g05160.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os07g49150.1 (Oryza sativa), 3'ss of exon 2
---------------------------------------------------------ctttgttatttacttttcttatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgt------tctaa--acttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
                                                          |  |   |  | || |    | |  |  || ||   |  ||   | ||  |  | |     |  | |      ||| |  |||    ||   ||||  |||   ||||| ||||| ||||| ||||| ||||||||||| ||||||||||| |||||| | |||||||| ||| | || ||||| || ||| |||| |||||  | |
gttagtgttctggtttgcgtattgggagtcaatatagcttatggcagtaatgcaggcttcagccctccatttatggcttgtaataattaagcaaagcattgcactatttgtcattctgtacctctcagttctctgaccactgattacttgcattgttgt-tgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAGCTTATTCAAAAGTATCTTGGTGATGGTCCCAAACTAGTCAGGGAACTGT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 2
ctttgttatttacttttct-tatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgttct----aaacttgcaa---ccctcatttatgtact-cagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
        || |  ||| |  ||||  ||    || || | ||  ||     |   | |  | | || |||     ||| |    |    | |  | ||  || | ||||| ||||| || |||||||||||||| || || ||||||||||| |||||||| || ||||| ||  | || ||||| || ||  | || || || || |
-------gttcatatttttgcatatgattaaaaaggtgcaaatttgat--attatatagctatattttttccttgaaaattcatgaatatctttttgtaattattgcagGCGGTTGCTAATTCTACATCAGCAACATTTTTGCGTGTTGTTGGGAGTGAGTTGATCCAAAAGTACCTTGGTGATGGCCCCAAGCTTGTAAGAGAATTGT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G35510.1 (Glycine max), 3'ss of exon 2
------ctttgttattt--acttttcttatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
        |  || | |  |||||  || |||| |||| |    | |  |   |  |||    |     |  ||| |||||      ||  ||   |||  |  |||||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| | || |||||  | |
gacatgtctcattgtgtcaactttgtttttattattgtgtgtggggaactacaaacagcacaatc----agtttggtctaacaca--aaggcttgcttactt--tcagGCTGTGGCAAACTCGACATCAGCAACCTTTTTACGTGTTGTTGGTAGTGAATTAATACAAAAATACTTGGGAGATGGTCCAAAACTTGTAAGGGAACTTT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G32800.1 (Glycine max), 3'ss of exon 2
-ctttgttatttacttttcttatattcttgtt-tagttgaagatcagagtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
  |       | ||| |    |  || || || |  |||   ||| | |||     |    || | |   | ||  ||   |     | ||| |    |||||| || |||||||| ||||||||||| || || ||||||||||| ||||| ||||| |||||||| ||||||||||| |||||  | || |||||  | |
gatccacatctcactgtgtcaactttgtttttattattgtgtatc-gtgtactacacacagcacaatcaatttagtctaatacaaacccttt-tactttcagGCTGTGGCAAACTCAACATCAGCAACCTTTTTGCGTGTTGTTGGTAGTGAATTAATACAAAAATACTTGGGAGATGGTCCAAAGCTTGTAAGGGAACTTT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G19280.1 (Glycine max), 3'ss of exon 2
-------------------------------ctttgttatttacttttcttatattcttgtt--tagttgaagatcagagtag--cttccttgtcaaagttgttcta--aacttgcaaccct--catttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
                                 || | ||  | |||    || | ||| ||  ||  |  |  |    | ||   |||  | | |    ||||  |  | |||   ||  |  | ||| |||| |||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||  | || ||||| || ||||||||||| |||||| | || || ||  | |
gtttgtgtttatcttttgcttcttctagagctgttttaatagagtttcaacatctcctttttactatctttatcttttggcagtgtttcaatttaaggagtgtttcagcatcttaagactatgccttttgtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAACTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTAAGAGAACTTT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G04920.1 (Glycine max), 3'ss of exon 2
------------------------------ctttgttatttacttttcttatattcttgtt--tagttgaagatcagagtagcttccttgtcaaag--ttgttcta--aacttgcaaccct--catttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
                                || | ||  | |||    || | ||| ||  ||  |  |  |    | ||  |  |  |  |||   ||||| |  | |||   ||  |  | ||| |||| |||||| || |||||||| ||||||||||| ||||| || |||||||| ||||| || || ||||| || ||||||||||| |||||| | ||||| ||  | |
gtttgcatttatctttgcttcttctagagctgttttaatagagtttcagcatctcctttttactacctttatctttaggcagtgttttgatttaaggagtgttccagcatcttaagacaatgccttttgtgtattcagGCCGTGGCAAACTCAACATCAGCAACATTCTTGCGCGTTGTTGGTAGTGAATTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTGAGAGAACTTT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 3'ss of exon 2
-------ctttgttatttacttttcttatattcttgtt-tagttgaagatcagagtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
       |||| |  |||   | | | | |  | ||   |||||| |  |  | |  | |  ||  |   | |      || ||  | | | | || | | |  | |||| ||||| || || |||||||| ||||||||  | |||||||| |||||| | ||||| || |||||||||||||| || ||  | ||||| ||  | |
tgtcttcctttctcgtttctctctgtcacaagcatgagatagttgcaatttggtggtgttatctaatgggaat------aagctctctaacttgatct-tat-tttagGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAGAACTTT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ20767 (Selaginella moellendorffii), 3'ss of exon 2
ctttgttatttacttttcttatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgttcta-aacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
                                         | || ||  | || ||      | || |    ||||  | | | |   || |     ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||| | |||||||| ||||||||||| || || ||  | || |||||| | |
----------------------------------------gtaagtgtgacatcttttaaggtgctgcttcgtaactaactagctttggttcta----cagGCTGTTGCAAACTCCACATCTGCAACGTTCTTGCGTGTTGTTGGCAGCGAGCTTATTCAAAAGTATTTGGGAGACGGTCCTAAGCTTGTTAGGGAGCTCT

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ32659 (Selaginella moellendorffii), 3'ss of exon 2
ctttgttatttacttttcttatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
                                         | |  ||  | || |||     | |  |    | ||  |||   | |||   |   ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||| | |||||||| ||||||||||| || || ||  | || |||||| | |
----------------------------------------gtaaatgtgacatctttgaaggtgctacttcgtaatt--aactagc-tttggttctacagGCTGTTGCAAACTCCACATCTGCAACGTTCTTGCGTGTTGTTGGCAGCGAGCTTATTCAAAAGTATTTGGGAGACGGTCCTAAGCTTGTTAGGGAGCTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27580875|gb|CB003570.1|CB003570
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110703456|gb|EE080320.1|EE080320
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110370827|gb|EC934375.1|EC934375
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|30321368|gb|CD004630.1|CD004630
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110713467|gb|EE089413.1|EE089413
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110700045|gb|EE077633.1|EE077633
EST:     GGGTCATACTATATGGAGAGCCTGGAACANGAAAGACCTTGCTTGCAAAA                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACG
EST: gi|71880466|gb|DT029521.1|DT029521
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110356778|gb|EC919853.1|EC919853
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|351013394|gb|FQ425425.1|FQ425425
EST:     GTCATACTATATGGAGAGCCTGGGAACAG-AAACACCTTGCTTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGT
genomic: GTCATACTATATGGAGAGCCTGG-AACAGGAAAGACCTTGCTT-GCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGT
EST: gi|110686088|gb|EE063379.1|EE063379
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|26264508|gb|CA815571.1|CA815571
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|351017955|gb|FQ439121.1|FQ439121
EST:     TGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|71861429|gb|DT010484.1|DT010484
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|27580357|gb|CB003052.1|CB003052
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|71880867|gb|DT029922.1|DT029922
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|161714191|gb|FC062936.1|FC062936
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|71861598|gb|DT010653.1|DT010653
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|30297307|gb|CB974101.1|CB974101
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|27580606|gb|CB003301.1|CB003301
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110390976|gb|EC955926.1|EC955926
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|30131170|gb|CB916509.1|CB916509
EST:     GGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|71864574|gb|DT013629.1|DT013629
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|110392599|gb|EC958132.1|EC958132
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: gi|71881961|gb|DT031016.1|DT031016
EST:     GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG                         GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT
                      ttctaaa  putative branch site (score: 2)
                                         atttatgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttgttatttacttttcttatattcttgtttagttgaagatcagagtagcttccttgtcaaagttgttctaaacttgcaaccctcatttatgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGTTAATTCAAAAATATTTGGGAGATGGGCCAAAATTAGTGAGGGAGTTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accctca