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...tctttgatgctagggtaagacataaaatttggtttcatatgccctcatactggggttctttatttgtaagttaaaagaaaaaaaaaattgtgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTTGTCCAGCAGCTTG
species | Vitis vinifera |
transcript | Vv07s0005g04440.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|161720302|gb|FC071155.1|FC071155
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|161719288|gb|FC068264.1|FC068264
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|71871395|gb|DT020450.1|DT020450
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|77580795|gb|DV219305.1|DV219305
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|110424142|gb|EC990498.1|EC990498
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|71864241|gb|DT013296.1|DT013296
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTEST: gi|161718481|gb|FC066331.1|FC066331
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
EST: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAG TGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
genomic: GGTGTGGGCCATCTGGTCCGGAAAGGGACGGGTGGGAGATCATCTGTGAGgtgagagtga ... tgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGT
catactggggttctttatttgtaagttaaaagaaaaaaaaaattgtgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTTGTCCAGCAGCTTG
tttatttgtaagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttgatgctagggtaagacataaaatttggtttcatatgccctcatactggggttctttatttgtaagttaaaagaaaaaaaaaattgtgtttggcagTGGCATTGTTGCTGTGGTTTTTGGAGCTACTGGGTTTCTTGGTCGCTATGTTGTCCAGCAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - tgatgct
- - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - gccctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa