Sequence
atgc intronic sequence ATGC exonic sequence...caaatttctaatcatgcacagctttatcaattagccaactatttatgtggatgttgctttttctgtttttttgggtaaaatttttgttgtctgtgattagGGTCTAGCAATGAGAATTATGATGCAATGACAGAATCAACAAGACCCTCAAAATTACTGGATGGTTCATCTGACTTTGTGCTCACCTATGAAGACAAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G35180.2 (Glycine max), 3'ss of exon 2
--caaatttctaatcatgcacagctttatcaattagccaactatttatgtggatgttgctttttctgtttttttgggtaaaatttttgttgtctgtgattagGGTCTAGCAATGAGAATTATGATGCAATGACAGAATCAACAAGACCCTCAAAATTACTGGATGGTTCATCTGACTTTGTGCTCACCTATGAAGACAAGGA
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tgtgtatattgatttgagataaaacatagagtttaattttgtctttccaatgtgtttgatttctcttttctcctaa-tggcattgacatcat-tgtcagtagGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGA
upper sequence: Vv07s0005g04380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G35180.4 (Glycine max), 3'ss of exon 2
-----caaatttctaatcatgcacagctttatcaattagccaactatttatgtggatgttgctttttctgtttttttgggtaaaatttttgttgtctgtgattagGGTCTAGCAATGAGAATTATGATGCAATGACAGAATCAACAAGACCCTCAAAATTACTGGATGGTTCATCTGACTTTGTGCTCACCTATGAAGACAAGGA
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tcttgtgtatattgatttgagataaaacatagagtttaattttgtctttccaatgtgtttgatttctcttttctcctaa-tggcattgacatcat-tgtcagTAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAA---
upper sequence: Vv07s0005g04380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G32450.1 (Glycine max), 3'ss of exon 2
caaatttc---taatcatg---cacagctttatcaattagccaactatttatgtggatgttgctttttctgtttttttgggtaaaatttttgttgtctgtgattagGGTCTAGCAATGAGAATTATGATGCAATGACAGAATCAACAAGACCCTCAAAATTACTGGATGGTTCATCTGACTTTGTGCTCACCTATGAAGACAAGGA
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-aaactacatgtgattttgagataaaagcatagagtttaattttgtccttttgatgtgttcgatttctcttttctcctaa-tggcattgacatcat-tgtcagTAGGATCAAATGGAGAAGATCACGGTACTGAAGTTGGAGCAGATGGGCATTCAAAATTGCTGCATGGTTCTTCTGACCTTGTGCTCACTTATGAAGACAA--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtggatgttgctttttctgtttttttgggtaaaatttttgttgtctgtgattagGGTCTAGCAATGAGAATTATGATGCAATGACAGAATCAACAAGACCCTCAAAATTACTGGATGGTTCATCTGACTTTGTGCTCACCTATGAAGACAAGGA
tttttctgttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caaatttctaatcatgcacagctttatcaattagccaactatttatgtggatgttgctttttctgtttttttgggtaaaatttttgttgtctgtgattagGGTCTAGCAATGAGAATTATGATGCAATGACAGAATCAACAAGACCCTCAAAATTACTGGATGGTTCATCTGACTTTGTGCTCACCTATGAAGACAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - catgcac
- - - - - - - - - - - - - - - - - ccaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaa