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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagagaaacactaaataaacgtagaattaccagaacatatacgtatgatcagagtactaattgatggattgatctgtattaattctagAGGTTCTATCTTGCCGGGAGCCCACAAAATGAATTCCAGCAGCAACGCA

Basic information

species Vitis vinifera
transcript Vv07s0005g03400.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30129569|gb|CB914908.1|CB914908
EST:     CTGTCATCGACATTAGCAATGATGCCAACCAGCTTGATTTCCAACCCAGA                         ANGTTCTATCTTGCCGGGAGCCCACAAAATGAATTCCAGCAGCAACGCAGT
genomic: CTGTCATCGACATTAGCAATGATGCCAACCAGCTTGATTTCCAACCCAGAgtatgtagag ... ttaattctagAGGTTCTATCTTGCCGGGAGCCCACAAAATGAATTCCAGCAGCAACGCAGT
EST: gi|30124788|gb|CB910127.1|CB910127
EST:     CTGTCATCGACATTAGCAATGATGCCAACCAGCTTGATTTCCAACCCAGA                         AGGNTCTATCTTGCCGGGA-CCCACAAAATGAATTCCAGCAGCAAC
genomic: CTGTCATCGACATTAGCAATGATGCCAACCAGCTTGATTTCCAACCCAGAgtatgtagag ... ttaattctagAGGTTCTATCTTGCCGGGAGCCCACAAAATGAATTCCAGCAGCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatatacgtatgatcagagtactaattgatggattgatctgtattaattctagAGGTTCTATCTTGCCGGGAGCCCACAAAATGAATTCCAGCAGCAACGCA
                                           tattaattcta  TA-rich tract