Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364582|gb|EC927944.1|EC927944EST: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGG ATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
genomic: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttgatttc ... attggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
EST:
gi|110402507|gb|EC960295.1|EC960295EST: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGG ATGGATCCTAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
genomic: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttgatttc ... attggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
EST:
gi|110375978|gb|EC941011.1|EC941011EST: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGG ATGGATCCTAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
genomic: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttgatttc ... attggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
EST:
gi|110375745|gb|EC940758.1|EC940758EST: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGG ATGGATCCTAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
genomic: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttgatttc ... attggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
EST:
gi|110427719|gb|EC994169.1|EC994169EST: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGG ATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
genomic: AGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttgatttc ... attggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttttctggtttgagtgctatggtgtttgatttcttttatttgcattggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAGAAGAGTGAAGGGTCTGCAACTGAGGAGGAGGCGTAGACATTGCGCTGTT
gtttgat putative branch site (score: 5)
tttgatttcttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgatttctctctgttttaatctcttccaatcgtttgtttttttccttttacttttgtgatctccttggtgggttttctggtttgagtgctatggtgtttgatttcttttatttgcattggcgtagATGGATCCCAAGTTTTTGAGGAACCAAAGGTATGCGAGGAAGCATAACAAGAAGAGTGAAGGGTCTGCAACTGAGGAGGAGGCGTAGACATTGCGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT