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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggatttgtctttcaagaagttataattctccttttaactttggttatctttgagcgattggtagctttgctttctcactctaattttgttcatcagAACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAG

Basic information

species Vitis vinifera
transcript Vv07s0005g01100.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G02150.1 (Arabidopsis thaliana), 3'ss of exon 2
gttggatttgtctttcaagaagttataattctccttttaactttggttatctttgagcgattggtagctttgctttctcactctaattttgttcatcagAACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAG
      |||||  || | |   ||||   ||   |  ||    |   || |  | || | || |        ||||  || |    |||| ||    |||||  | |||||| |||||||||||| ||||||||||||||||||||||  | ||  |||| |||  |||||||||||||||  | ||||||
-----gtttgtgatttatg---ttattgatcgt-tactagtagtacataacaatcagtgttttggttagagtctttagcagttgttttttcttttgtagAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAG

upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G02690.1 (Arabidopsis thaliana), 3'ss of exon 2
gttggatttgtctttcaagaagttataattctccttttaactttggttatctttgagcgattggtagctttgctttctcactctaattttgttcatc--agAACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAG
   | |  ||  ||  ||     |  |  |  | |||    |||| || | ||   |   || ||   |||||||  |     |  ||   ||  |   ||| || | ||||||||||||||||||| | ||||||||||||||||||| | | ||  | || |||  ||||||||||||| | || ||||||
---gtacgtgatttataaatctcttaacatggcgtttagggtttgattgttttgtgggttttagt--ttttgcttattgtggttggttgaattttttgtagAGCGAAATCCTCCAATCAATGAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTCACTCAACTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatctttgagcgattggtagctttgctttctcactctaattttgttcatcagAACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAG
                                          ttttgttc  CT-rich tract
                                       taattttgtt  TA-rich tract