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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtctccttccaaaacccttcattctttgagatctcgcgtgtggttcgcctacaattcttctgcttctgtttgttgtcggctagggttttcaaagcccttcgtttgctattctaatgacgactttgttatttatttatttatttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG

Basic information

species Vitis vinifera
transcript Vv07s0005g00230.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828814|gb|FQ419147.1|FQ419147
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGC-TTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|349819985|gb|FQ404707.1|FQ404707
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|349819983|gb|FQ404705.1|FQ404705
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|110372194|gb|EC936345.1|EC936345
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|110383606|gb|EC947989.1|EC947989
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|349827595|gb|FQ422463.1|FQ422463
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|351029470|gb|FQ436864.1|FQ436864
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|110692708|gb|EE068197.1|EE068197
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|351012236|gb|FQ426958.1|FQ426958
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|351044635|gb|FQ443166.1|FQ443166
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|351025082|gb|FQ433499.1|FQ433499
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|349828184|gb|FQ415512.1|FQ415512
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|351056955|gb|FQ443582.1|FQ443582
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|110374587|gb|EC939452.1|EC939452
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|351038850|gb|FQ448493.1|FQ448493
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|110372487|gb|EC936658.1|EC936658
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|352790730|gb|FQ478278.1|FQ478278
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAG                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
EST: gi|349828185|gb|FQ415513.1|FQ415513
EST:     GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAA                         GCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
genomic: GGTTTTGCGTTTGGCTTCATCCTTTCTTCTCCACTCCAATCTCACCGCAGgtacttgtct ... ttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgtttgctattctaatgacgactttgttatttatttatttatttttcgccagGCTGGGTGTTCTGCTTTTTGTGCCCTAGTAAAAATG
            ttctaat  putative branch site (score: 2)
                                    tttatttatttttc  putative PPT
               taatgacgactttgtt  TA-rich tract