Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188596|gb|CF607945.1|CF607945EST: CTGTGAAGGTTGCAAGAAGAAAGTGAAGAAAGTTCTCCATAGCATCGATG GTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTG
genomic: CTGTGAAGGTTGCAAGAAGAAAGTGAAGAAAGTTCTCCATAGCATCGATGgtatcgccaa ... tcatgttcagGTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTG
EST:
gi|34363301|gb|CF404886.1|CF404886EST: CTGTGAAGGTTGCAAGAAGAAAGTGAAGAAAGTTCTCCATAGCATCGATG GTGTTTATACACCAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTG
genomic: CTGTGAAGGTTGCAAGAAGAAAGTGAAGAAAGTTCTCCATAGCATCGATGgtatcgccaa ... tcatgttcagGTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTG
EST:
gi|349823134|gb|FQ400113.1|FQ400113EST: CTGTGAAGGTTGCAAGAAGAAAGTGAAGAAAGTTCTCCATAGCATCGATG GTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTG
genomic: CTGTGAAGGTTGCAAGAAGAAAGTGAAGAAAGTTCTCCATAGCATCGATGgtatcgccaa ... tcatgttcagGTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttttttctctttttttgaggggtcgattttaccatgttctttcatgttcagGTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTGGAAATGTGGACGCAGAGACCCTAATCAAGAAGCTGGTGAAAACTGGAAA
tgttctttc CT-rich tract
tttttctcttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcgccaaattccaaccatcttgcatgtgttttcttcttctctcaatttccttatttgttctattatgtgtagttgttgcatttctttttgatcaattcacttgtatttttcttcatttttttctctttttttgaggggtcgattttaccatgttctttcatgttcagGTGTTTATACAACAGTGATTGATTCTCAGCAACATAAAGTTACAGTCACTGGAAATGTGGACGCAGAGACCCTAATCAAGAAGCTGGTGAAAACTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG