Sequence
atgc intronic sequence ATGC exonic sequence...aatcttttttgagtgtcagttgattataattcattgccttaacttgtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G39680.1 (Glycine max), 3'ss of exon 2
aatcttttttgagtgtcagttgattataattcattgcctta-acttgtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
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------------gtattcataatttccctttcatttagttgcatttggatagattattgaatttctc---tttttgagtttgggttatgatgttgttttagATTGCTAGCTCCTTACATATCACGTGGGATATTTTGGAAGGTTTTGAAGCTATGGATGAAGGGATACAAGGTCATTGTTCTTGATGTGCCTTTGTTATTC
upper sequence: Vv07s0005g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G37050.1 (Glycine max), 3'ss of exon 4
aatcttttttgagtgtcagttgattataattcatt-gccttaacttgtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
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------------gtattcataatttccctttcatttagttccatttgaattgatcattgaatt---tgctcttttgagtttgggttatgatgttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCTATGGATGAAGGGTTATAAGGTCATTGTTCTTGACGTGCCTTTGTTATTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423978|gb|EC990331.1|EC990331EST: TTGGGTCAGATTGTATTTTCTGATCCGGGCAAACGCCAACTGCTCAACCG GCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAGCT
genomic: TTGGGTCAGATTGTATTTTCTGATCCGGGCAAACGCCAACTGCTCAACCGgtatattcat ... acatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACT
EST:
gi|110425944|gb|EC992340.1|EC992340EST: TTGGGTCAGATTGTATTTTCTGATCCGGGCAAACGCCAACTGCTCAACCG GCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACT
genomic: TTGGGTCAGATTGTATTTTCTGATCCGGGCAAACGCCAACTGCTCAACCGgtatattcat ... acatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
cattttt CT-rich tract
tttttactcttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatcttttttgagtgtcagttgattataattcattgccttaacttgtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
- - - - -tgagtgt
- - - - - - - - - - - - - - - - - tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcaa