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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA

Basic information

species Vitis vinifera
transcript Vv06s0080g01080.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G027378_T01 (Zea mays), 3'ss of exon 2
----aagattttgtgtt-tgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
     || | || | |    | |||  | ||  |    ||   |   |||||    ||||  |    | ||  | || ||  |||  || |     |||| |||| |||||||||| |||||||| || || |||||| | |||||||| ||||| |||||||||||||| ||   |||  | ||||| ||| | ||||||||||
tctgtaggtcttctctaacaacagcgcagtcttttccatagagttacttctcttggctatctaatttgtttccacgtccaacaacatttct-----ctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAAGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G071010_T01 (Zea mays), 3'ss of exon 2
----aagattttgtgtt-tgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
     || | || | |    | |||  ||||  |    ||   |   |||||    ||||  |      ||  | || |   |||  || |     |||| |||| |||||||||| |||||||| || || |||||| | |||||||| || || |||||||||||||| ||   |||  | ||||| ||| | ||||||||||
tctgtaggtcttctctaacaacagcgcattcttttccatagagttgcttctcttggctatctaatttatttccacgtcccacaacatttct-----ctttgtcagACTGTACATGAGGGTCGCATCTACCAGCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G21780.1 (Glycine max), 3'ss of exon 1
aagattttgtgtttgatagcttatt--ccatcgtgtatcatgtattctcacatctatacatacagattttatgttcat----taactattt-taattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
       | | | | |||   || |  |  || | | |  | || |   | |  | |   | || ||  |||  | ||    |    |||| |  || || | |||| || ||||||||||    ||||||||||||||||| ||| |||||||||| || || || ||||| |||||||| ||||| |||||||| ||||||||||
-------tatatataataatgtacttactttcattttttttatagttaaaaaaatttgtttgcaaatcctataattatgctattctcatttatcttttctctgtcagACTATACATGAAGGAAAAATTTATCAACTGAAGCTGTTTGGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGAATCAACATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G35790.1 (Glycine max), 3'ss of exon 2
aagattttgtgtttgatagcttattc--catcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
     | | |    ||||   |  |     |  | |||  || ||    |      || || ||| ||   |  |   |  || |||   ||  | |  ||| |||||||||||||  | ||||||||| ||||| | |||||||||||||| || || || ||||| || ||||| ||||| |||||||| ||||| ||||
-tatctcttttccagataatgtgcttgtttttttatatgctgcatgaataacaggctatatgcaggttcagtaatttatg-ctttttgtgtttttctaccagACTGTACATGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAATCAATATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G38450.1 (Glycine max), 3'ss of exon 2
aagattttgtgtttgatagcttattcca--tcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
     | | |    ||||   ||||     |  | |||| || ||    |      ||  | ||| ||   |  |  |   || |||   ||  | |  ||| |||||||||||||  | ||||||||| ||||||| |||||||||||||| || || || ||||| || || || ||||| |||||||| ||||| ||||
ttatctcttttccagataatgtatttgtatttttatatcctgcatgaatatcaggctatttgcaggttcagtaattgt--gctttttctgtttttctaccagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCTGAAAAGCCCCCGAGCGTCCGGTTTCATTCACGGATCAATATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G36060.3 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
                            |  |  | ||  ||||||    ||   || | | || || ||  |         | ||   ||| | || |    | |||  |    ||  || | ||| |||||||||| ||||| ||||||||  ||||||| || ||||| |||||||| || ||||| ||||| | ||| ||||||||||| || ||||||||||
gtagttatatctctgtttttttttcttcacttgctatgaatgataggactttgtgtcttct-tcttgaatggtgttggaatgatattgtgatgtgatttgatctgactggtaattttgtttgtgcagACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G36060.2 (Arabidopsis thaliana), 3'ss of exon 2
------------------------aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
                         |  |  | ||  ||||||    ||   || | | || || ||  |         | ||   ||| | || |    | |||  |    ||  || | ||| |||||||||| ||||| ||||||||  ||||||| || ||||| |||||||| || ||||| ||||| | ||| ||||||||||| || ||||||||||
gttatatctctgtttttttttcttcacttgctatgaatgataggactttgtgtcttct-tcttgaatggtgttggaatgatattgtgatgtgatttgatctgactggtaattttgtttgtgcagACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G52560.1 (Arabidopsis thaliana), 3'ss of exon 2
aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatc-tatacatacagattttatgttcattaactattttaattactttttc--agTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
      |||   ||     | ||     || |      | | |   || ||  |     |   | ||||   |  | ||||     ||| |  | | ||  || |||| ||||||||| | || |||||  ||||||| |||||||| |||||||| |||||||| ||||| | ||| || |||||||||||  |||||||| 
---gcattgatcttatcgacatacaatctcttaagctttatttgagcagattatgccattgttgcttttgcttgtagtaacagagataaattttatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAGAAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGG

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ15952 (Selaginella moellendorffii), 3'ss of exon 2
aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattacttttt-cagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
                   | | || | |  | |    | | | |||  | | || ||      | ||  | |  ||   | | | | ||| | | | |||||||| || ||||| ||||||||||| || ||| | |  || || ||||| |||||||| ||||| || ||||| || |||||||| || ||||||||||
-----------------gtcctctttcttttttttctttctttgctctta-caatgcac-tgactctttcgctttttttttttctcatttattctgtgcagTCTGTTCACGAAGGACGCATTTATCAGCTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGA

upper sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ33318 (Selaginella moellendorffii), 3'ss of exon 2
aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattacttttt-cagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
                     |  ||  || | | |  | | |  |  |   |||| || |      | | |   ||   | | | | ||| | | | |||||||| || ||||| |||||||||||||| ||| | |  || || ||||| |||||||| ||||| || ||||| || |||||||| || ||||||||||
--------------------gtcctctttcttttttt-tctttctttgctcttata-atgccctgactctttcgcttttttttctcatttattctgtgcagTCTGTTCACGAAGGACGCATTTATCAACTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710128|gb|EE086190.1|EE086190
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|29786222|gb|CB343829.2|CB343829
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110380195|gb|EC945441.1|EC945441
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110375015|gb|EC939967.1|EC939967
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110396671|gb|EC962365.1|EC962365
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|32267862|gb|CD717021.1|CD717021
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|28964729|gb|CB343762.1|CB343762
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110422039|gb|EC988350.1|EC988350
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|32269983|gb|CD719142.1|CD719142
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110695956|gb|EE074565.1|EE074565
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|33408882|gb|CF214509.1|CF214509
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATAAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|32272011|gb|CD721170.1|CD721170
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|71874414|gb|DT023469.1|DT023469
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110705394|gb|EE082194.1|EE082194
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|30323103|gb|CD006365.1|CD006365
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|71890414|gb|DT039469.1|DT039469
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|30323096|gb|CD006358.1|CD006358
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110717402|gb|EE093225.1|EE093225
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110717466|gb|EE093345.1|EE093345
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|110702625|gb|EE078761.1|EE078761
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
EST: gi|30125506|gb|CB910845.1|CB910845
EST:     ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAAT                         TCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT
genomic: ATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagcc ... actttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA
                                           ttactttttc  CT-rich tract
                agattttatgttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagattttgtgtttgatagcttattccatcgtgtatcatgtattctcacatctatacatacagattttatgttcattaactattttaattactttttcagTCTGTACATGAAGGTCGCATTTATCAACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattaac