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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttttttcttcatgtttttattatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG

Basic information

species Vitis vinifera
transcript Vv06s0080g00860.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G348866_T03 (Zea mays), 3'ss of exon 2
gtatttttttttcttcatgtttttattatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG--------------------------------------------------
||     | |   ||   | ||||  | | |  |   |     | ||  | |  | |    ||   | | || ||  ||||||| |||||||||| ||||||||||| || ||||| ||||||||||| |                                                  
gtgagggtctgggttgggggttttgct-tgtgctcctacgcggtctggttctgtcctgac-tgtgctcgattggtc-cagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGGTACGGACGACTTCCTGGCTTGCGTCTTGGGTCGTTGGTTTGTTTTTATG

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G348866_T02 (Zea mays), 3'ss of exon 2
gtatttttttttcttcatgtttttattatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG
||     | |   ||   | ||||  | | |  |   |     | ||  | |  | |    ||   | | || ||  ||||||| |||||||||| ||||||||||| || ||||| ||||||||||| |
gtgagggtctgggttgggggttttgct-tgtgctcctacgcggtctggttctgtcctgac-tgtgctcgattggtc-cagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S54_95V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------gtatttttttttcttcatgtttttattatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG
                      | | ||||  || || |  | |    ||   ||    ||   | ||   || |  ||||  || |  |  |  ||| ||||   || ||||| |||||||||||||| ||||||||||| ||||  ||||
gtgataattcagtttctctacagcagttttggtttttga-atatgccgtactcaaccgaaaccgtgatttgttgttgattt-gtggacgt-ctccgttgcagGCGGACACAGCCGCGGTTCCAGTTCATAGTGATGAATCGTCGCAGTACAG

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S197_88V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------------gtatttttttttcttcatgttt---ttattatataatttgaa--attttatgaattttccattttatgaatttgtttt-gtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG
                         |  ||    || |  ||||||   || ||||||| ||| |   | ||| |||  |||   |  | ||     || || ||| ||||  | | ||||| |||||||||||||| |||||||||||||  |  || |
gtgggaattcagttgctctgatgtatgcttcgggttttaaatgtttgtttttttatatatttttactcagtttgtgatgttttagtgatgtgtgggcgtcttcgttgcagGCGCTCACAGCCACGGTTCCAGTTCATAGTGATGAATCGGCAGAGTACGG

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ11747 (Selaginella moellendorffii), 3'ss of exon 2
gtatttttttttcttcatgtttttattatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG
                                        |  | ||  || |   | || ||  ||  |  || |  |||   |  |||||| |||||||||||||||| ||||||||  | | |||||
---------------------------------------gtggtgtggtttgtttttattctgtgttcttggtgatctagGCGGATGCAGCCCAGGTTCCAGTTCATTGTCATGAATCGCAGGAGCACAG

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ22541 (Selaginella moellendorffii), 3'ss of exon 2
gtatttttttttcttcatgtttttattatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG
                                        |  | ||  || |   | || ||   |  |  || |  |||   |  |||||| |||||||||||||||| ||||||||  | | |||||
---------------------------------------gtggtgtggtttgtttttattctgtgctcttggtgatctagGCGGATGCAGCCCAGGTTCCAGTTCATTGTCATGAATCGCAGAAGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatataatttgaaattttatgaattttccattttatgaatttgttttgtttcagGAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAG
                                            ttttgtttc  CT-rich tract
     taatttgaaattttat  TA-rich tract