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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagattgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC

Basic information

species Vitis vinifera
transcript Vv06s0061g01310.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G09060.1 (Glycine max), 3'ss of exon 2
gtaagtatttctaatatatttcttctgactgattgtacttcat-atttgtttagattgaatgctgtaag-ttgtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC
|| |||  || |  | |   |    ||     ||||  ||| | || ||||  | |||| || | |||  |||  |      |||   | ||    | ||||| ||||||||||| ||| | |||||||| || || ||||||||||| || || |||||||||||||||||||   | |||||| | |||||||||||||| ||||| |
gtgagttgttttcgtgtggcttagttg-----ttgtttttcgtgatgtgttgtgtttgagtgttttaatcttggtggcgaagttg--ttgat--gtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCC

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 2
gtaagtatttctaatatatttcttctgactgattgtacttcatatt-tgtttagattgaatgctgtaagtt-gtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC
|| |||| || |  | |   |    ||  || |  |  |   | || ||||  | |||| || | | | || |  |      |||   ||||    | ||||| ||||||||||| ||| | |||||||| || || ||||||||||  || || ||||| |||||||||||||   | |||||| | |||||||||||||| ||||| |
gtgagtagttttcgtctggcttagttg-ttggtgtttttctgtgttgtgttgtgtttgagtgttttgattttggtggcaaagttg--ttaat--gtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGCCTCGGGGGTGACTACTCTCTTGCATATTGCTTTTGGCTCTAGGTTGCCCTTGATTCAGGGCC

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G30670.1 (Glycine max), 3'ss of exon 2
-gtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagattgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC
  ||||||||| ||  | |      || ||||| | |   |   |||| ||| | | ||||    ||||| |  |  ||| |  |||||||    | | |||||| |||||||||||| |   |||||  || |||||||||||||| || |||||||| || || |||||||||   |||||  ||||||||||||||||||| || |
tttaagtatttatagaa-acaggacctaactgaatttttatt-catttattttggt-gaatttgttaagtgg--gtattgtt--atctaat--gtgtttgtgggtctagGAGGATACTTCTGCGGTGGCATCAACTGTGCTCTTTGTTTCGGGAGTGACTACACTGTTGCATACAAGTTTTGGGTCGAGGTTGCCCTTGATACAAGGGC

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 2
gtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagattgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC
 |||  | ||   | | |      || ||||| | |   |  ||||| ||| | | ||||    |||||    | ||    | |||| ||    |   |||||||||||||||||||     |||| | || |||||||||||||| || |||||||| || || |||||||||   |||||  ||||||||||||||||||| || |
ttaaaaagtttatacaaacaggacctaactgaatttttatt-tatttattttggt-gaatttattaagt----ggttattcttatctgatgtgtgt--gtgggtgtagGAGGATACTTGTTCGGTGATTTCGACTGTGCTCTTTGTATCTGGAGTGACTACACTGTTGCATACAAGTTTTGGGTCGAGGTTGCCCTTGATACAAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC
                              atctaat  putative branch site (score: 3)
                              atctaatt  TA-rich tract