Sequence
atgc intronic sequence ATGC exonic sequence...caacactctttcacacattaccaaactccaccgcaaaaccattgaattccccatctgcgtctttgaaaatcacgtattcatcacatgggttttgtctcagAACCTGGTGGAGACGGAATGCCAGAGATGGGCAGCCAAAGGCATCAACATAAGGTACCAAATCAGAGAGAACAGAGTGGGGTACAAAGCAGGAGCTCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G19490.1 (Glycine max), 3'ss of exon 2
caacactctttcacacattaccaaactccaccgcaaaac-cattgaattccccatctgcgtctttgaaaatcacgtattcatcacatgggttttgtctcagAACCTGGTGGAGACGGAATGCCAGAGATGGGCAGCCAAAGGCATCAACATAAGGTACCAAATCAGAGAGAACAGAGTGGGGTACAAAGCAGGAGCTCTGA
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ttatgttgaggggtttggtggaggaattgatcaaatggcatcttaaatttatgtactctaataatgaattatatgaaattga-atttgtgattgattgcagCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAGGGCATAAACATAGTGTACCAAATCAGAGAAACAAGAGGAGGGTACAAAGCGGGTGCTCTAA
upper sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G05350.1 (Glycine max), 3'ss of exon 2
-----caacactctttcacac-attaccaaactccaccgcaaaaccattgaattccccatctgcgtctttgaaaatcacgtattcatcacatgggttttgtctcagAACCTGGTGGAGACGGAATGCCAGAGATGGGCAGCCAAAGGCATCAACATAAGGTACCAAATCAGAGAGAACAGAGTGGGGTACAAAGCAGGAGCTCTGA
|| |||| | | | | | | || | ||| | | | ||| || || | | | | | || | |||||||| ||||| |||||||||| |||||||||||||||| ||||||||| || ||||||||| ||| |||||||| || || |||
gtaaataattgtcttgcttattgacattgtagtgacacatggaatcgttggcatttatggactaatacggcataatattgtttttaccgtgcttatgtatgattagGAAATGGTGGAGCAAGAATGTTTGAGATGGGCAAGTAAAGGCATCAACATAACGTACCAAATAAGGGAGAACAGAACGGGTTACAAAGCTGGTGCGTTGA
upper sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G08990.1 (Glycine max), 3'ss of exon 2
caacactctttcacacattaccaaactccaccgcaaaaccattgaattccccatctgcgtctttga---aaatcacgtattcatcacat--gggttttgtctcagAACCTGGTGGAGACGGAATGCCAGAGATGGGCAGCCAAAGGCATCAACATAAGGTACCAAATCAGAGAGAACAGAGTGGGGTACAAAGCAGGAGCTCTGA
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-----gtgtataatgaagttaatatatgtggagtttggtggaggaatttatcaatggaatcttaaatttgagtgctctaataatgaaatttgagattgattgcagCAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATAGTGTACCAAATCAGAGAAACAAGAGGAGGGTACAAAGCGGGTGCTCTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attccccatctgcgtctttgaaaatcacgtattcatcacatgggttttgtctcagAACCTGGTGGAGACGGAATGCCAGAGATGGGCAGCCAAAGGCATCAACATAAGGTACCAAATCAGAGAGAACAGAGTGGGGTACAAAGCAGGAGCTCTGA
ttttgtctc CT-rich tract
tttgaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caacactctttcacacattaccaaactccaccgcaaaaccattgaattccccatctgcgtctttgaaaatcacgtattcatcacatgggttttgtctcagAACCTGGTGGAGACGGAATGCCAGAGATGGGCAGCCAAAGGCATCAACATAAGGTACCAAATCAGAGAGAACAGAGTGGGGTACAAAGCAGGAGCTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
caacact
- - - - - tcacaca
- - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - -caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacatg