1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtttcgatatatttgtagaagccctagctgactatgagttaaaatgaattgaatttcaatcaatactgttttgatgcgatttagggcagTGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCAACATGGTGGTAAG
species | Vitis vinifera |
transcript | Vv06s0061g01020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT TGCAGATGAGTTGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCAEST: gi|110405980|gb|EC971538.1|EC971538
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcagTGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCA
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGC- T----ATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCAEST: gi|71857084|gb|DT006139.1|DT006139
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcagTGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCA
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGACT TGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCAEST: gi|110429540|gb|EC996035.1|EC996035
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcagTGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCA
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT GEST: gi|110429540|gb|EC996035.1|EC996035
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcag-
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT GEST: gi|110429540|gb|EC996035.1|EC996035
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcag-
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT GEST: gi|110429540|gb|EC996035.1|EC996035
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcag-
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT GEST: gi|110429540|gb|EC996035.1|EC996035
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcag-
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT GEST: gi|110429540|gb|EC996035.1|EC996035
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcag-
EST: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCT G
genomic: TTGGGGAATAAGGAAGCGTTTGAGAAGGAGCGGGCTCGGCTgtaagtttcg ... tttagggcag-
tgagttaaaatgaattgaatttcaatcaatactgttttgatgcgatttagggcagTGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCAACATGGTGGTAAG
ttttgat putative branch site (score: 4)
taaaatgaattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcgatatatttgtagaagccctagctgactatgagttaaaatgaattgaatttcaatcaatactgttttgatgcgatttagggcagTGCAGATGAGATGAATAGGGGTTACTTCGCTGACATGTCTGAATTCAAGCAACATGGTGGTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG