Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgctagctcttgctaacgttgttgcttgtgccaaaacctggttactttcctggttcctgaattgcagaagtttatcctttttctagGTTCTACACTCTGGTGAAGGTCCTATACATGCAGTGAAGTGGAGAACAAGTCTCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTA

Basic information

species Vitis vinifera
transcript Vv06s0061g00940.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 2
gtttgtgctagctcttgctaacgttgt---tgcttgtgccaaaacctggttactttcctggttcctgaattgcagaagtttatcctttttct----------agGTTCTACACTCTGGTGAAGGTCCTATACATGCAGTGAAGTGGAGAACAAGTCTCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTA
||||||   |    ||  | || | |    |  ||   | | |      ||  |||  |        |||| |       || |||                ||||| | ||||||||||||||| | |||||||| ||||| |||||| |||||||  |||||||||||||||||||||| || || |||||||||||||| |
gtttgtaagaatgttttattacttagcacatattttctcaacagtaccttttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 2
gtttgtgctagctcttgctaacgttgttgcttgtgccaaaacctggttactttcctggttcctga----attgcagaagtttatcctttttcta-gGTTCTACACTCTGGTGAAGGTCCTATACATGCAGTGAAGTGGAGAACAAGTCTCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTA
||||||   |    ||  | || || |  | | ||     | | |  |  |||  | |||   ||    ||| |       || |||      | |||| | ||||||||||||||| | |||||||| ||||| |||||| |||||||  ||||||||| |||||||||||| || || |||||||||||||| |
gtttgtaagaatgttttattac-ttatcacatatgttctcaacagtatcttttgtttgttaacgataaaattaccccgccctaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGTTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtgctagctcttgctaacgttgttgcttgtgccaaaacctggttactttcctggttcctgaattgcagaagtttatcctttttctagGTTCTACACTCTGGTGAAGGTCCTATACATGCAGTGAAGTGGAGAACAAGTCTCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTA
|||||||  |      |   |    |||  |||    | || ||  | ||          | ||||||  | |||        |||| ||||| || || ||||| |||||||| || ||| | ||||||||||||  ||||||||| || |||||||||||||  ||||| |||||||||||||| || |
gtttgtgagaatgtgggtagattacgtt--ttggaatagaatctactcac----------cgtgaatttgataagag-gctagttttgtagGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGTCTCATCGCCTGGGCTAATGATGTTGGTGTTAAAGTTTATGATACAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaacctggttactttcctggttcctgaattgcagaagtttatcctttttctagGTTCTACACTCTGGTGAAGGTCCTATACATGCAGTGAAGTGGAGAACAAGTCTCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTA
                                       tttatcctttttct  CT-rich tract
                                    aagtttat  TA-rich tract