Sequence
atgc intronic sequence ATGC exonic sequence...tccatggagtctgcatccaaaccattccaactttaatacctagcagtgctctttatttaatttgaaacattaatttatttttttgggatgttctctgtagCTGTGACTGCTGGTAAAGTACTAGAAGGAGAGATGTTCAGAATGACACTATCCAAACCAAAGAATGGTAATGCACAGCATCTGCGAGTCGTATCTGTTGT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110362767|gb|EC926321.1|EC926321EST: GTGCTCTGCTGATGAGTTTTTTGATTTTGTCAAGCTTCATCCTTTTGCAG CTGTGACTGCTGGTAAAGTACTAGAAGGAGAGATGTTCAGAATGACACTAT
genomic: GTGCTCTGCTGATGAGTTTTTTGATTTTGTCAAGCTTCATCCTTTTGCAGgtaaccctct ... ttctctgtagCTGTGACTGCTGGTAAAGTACTAGAAGGAGAGATGTTCAGAATGACACTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgctctttatttaatttgaaacattaatttatttttttgggatgttctctgtagCTGTGACTGCTGGTAAAGTACTAGAAGGAGAGATGTTCAGAATGACACTATCCAAACCAAAGAATGGTAATGCACAGCATCTGCGAGTCGTATCTGTTGT
cattaat putative branch site (score: 3)
tgttctct putative PPT
tttatttaatttgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccatggagtctgcatccaaaccattccaactttaatacctagcagtgctctttatttaatttgaaacattaatttatttttttgggatgttctctgtagCTGTGACTGCTGGTAAAGTACTAGAAGGAGAGATGTTCAGAATGACACTATCCAAACCAAAGAATGGTAATGCACAGCATCTGCGAGTCGTATCTGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-ccatgga
- - - - - - gcatcca
- - - - - - - - - - -ccattcc
- - - - - - - - - - - - - - - - - - - cctagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat