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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccctctctctctatttatattttctgtagttatgtagctgttgaagttgatttattttgttttcttttaatttaatttaatttttaatggcagATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTATTGGGAATGTC

Basic information

species Vitis vinifera
transcript Vv06s0061g00460.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110407172|gb|EC972769.1|EC972769
EST:     TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACT                         ATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA
genomic: TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACTgtaccctctc ... ttaatggcagATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA
EST: gi|22010774|gb|BQ795808.1|BQ795808
EST:     TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACT                         ATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA
genomic: TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACTgtaccctctc ... ttaatggcagATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgaagttgatttattttgttttcttttaatttaatttaatttttaatggcagATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTATTGGGAATGTC
                                           ttttaat  putative branch site (score: 3)
                                          ttttt  CT-rich tract
           atttattttgttttct  TA-rich tract