1 5' 3' | 2 5' 3' | 3 5' 3' |
...acatatccagttgcttctaacttttgccattttgtatgtgagatcagcaatgccaatatttttcagatgcttacagaacataacaccatttctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA
species | Vitis vinifera |
transcript | Vv06s0061g00300.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAG GCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGTEST: gi|110722828|gb|EE099442.1|EE099442
genomic: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAGgtacttgcat ... tctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGT
EST: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAG GCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGTEST: gi|110381813|gb|EC935451.1|EC935451
genomic: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAGgtacttgcat ... tctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGT
EST: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAG GCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGTEST: gi|351046931|gb|FQ454541.1|FQ454541
genomic: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAGgtacttgcat ... tctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGT
EST: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAG GCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGT
genomic: GGATTGCAAGAGGATTTATAGCTGAAGAATGTGCAACGTTTTGTTTAAAGgtacttgcat ... tctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGT
agcaatgccaatatttttcagatgcttacagaacataacaccatttctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA
caccatttctttttc CT-rich tract
aatatttttcagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatccagttgcttctaacttttgccattttgtatgtgagatcagcaatgccaatatttttcagatgcttacagaacataacaccatttctttttcagGCCACCAATATCATTATTGTATCATCTTATGAGCTTTTACTGTTTGCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
-catatcc
- - - - - -tgcttct
- - - - - - - - - - - -ttgccat
- - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacca