Sequence
atgc intronic sequence ATGC exonic sequencegttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgatgtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G01820.1 (Glycine max), 3'ss of exon 2
gttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgat-gtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA---
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------------gtgacttgatcaagactctaaaattt--gagttctctggtatttgtttgatctcgaggttaattggttttgctgcttgcagGATCTCTTTGATTTTATTGCGTCTTCATTGAAGGAATTCATTGCTAAAGAAGGAGATGGTTCCAATATTTCACAGG---ACAGAAGGGAGCTTGGATTTACAT
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G43650.1 (Glycine max), 3'ss of exon 2
gttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgat-gtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA---
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-gtgacttgatcaagactctaaaatttgagttctctggtatttgtttgatctcttagcatcat--agaggttaattgattttgctgcttgcagGATCTCTTTGATTTTATTGCGTCTTCATTGAAGGAATTCATTGCTAAAGAAGGAGATGGTTCCAATATTTCACAGGATA---GAAGGGAGCTTGGATTTACAT
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G10130.1 (Glycine max), 3'ss of exon 2
------------------------gttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgatgtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA
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gtgacttaaatgatcttctacccttttggtgtttatgtggcttgctcttttctctttggagtatgggttcttttagtataatagaattagaatgtaattgattttgctgcttgcagGATCTCTTTGATTTCATTGCTTCTTCATTAAAGGAATTCATTGAGAAAGAAGGAAACGCTTCTGAGCTTTCGCTGGACAGAAGAAGGGAACTTGGATTCA
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G02450.1 (Glycine max), 3'ss of exon 2
------------gttgcctattttgtagctcacaagtt--cttctttgccttcaaaatcttgccatattcggataattcaaaaaatgat-gtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA
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gtgacttaatcttctactcttttggtgtttctctggcttccccttttctctttggggcagggggttcttttagtatagtagaatgtaattgattttgctgcttgcagGATCTCTTTGATTTCATTGCTTCTTCATTAAAGGAATTCATTGAGAAAGAAGGAGACGGTTCCGAGCTTTCACCGGACAGAAGAAGGGAACTTGGATTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721153|gb|FC070389.1|FC070389EST: ATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAG GATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAA
genomic: ATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAGgttgcctatt ... ttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaaatcttgccatattcggataattcaaaaaatgatgtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA
tgtttcttttgctt CT-rich tract
ataattcaaaaaatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgatgtttcttttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAAGCACAAAATTCAGAGTTTTCACCTGTTAAAAGAAGGGAACTTGGCTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG