Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G03930.1 (Glycine max), 3'ss of exon 2
gtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA
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gtaagtgtcttaattctggttt------tctaaaatttttatgctct---ccaataatgaaatctaagaggcagcgtattttatgattggtgcagATATATTCTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCTAATTTGGCTCATGGAACCCTGCCCGCAGCATTTCCATTTTTCTATATGAAC
upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G08020.1 (Glycine max), 3'ss of exon 2
gtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA
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gtaaattt-----ctttattctggttttcttgga----tgttatgctctccagtaaca-aaacctaagaggcagtgcattttctgattgatgcagATATATTTTGATGGCAGAACCTGACCACATATTTGTAAATCCTTTGCCAAATTTGACTAATGGAAACCAACCAGCAGGGTATCCATTTTTCTATATAAAA
upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G44810.1 (Glycine max), 3'ss of exon 4
gtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA
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gtaagtgtcttaattctgcttt------tctacaatttttatgctct---ccaacaatgaaatctaagaggcagcacattttatgattggtgcagATATATTCTGATGGCAGAACCTGACCACATATTTGTAAAGCCTTTGCCTAATTTGGCTCAGGGAACCCTGCCCGCAGCATTTCCATTTTTCTATATAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA
tcttaac putative branch site (score: 2)
aaacttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG