1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtatccaatcccattcccgacccattgcataaagtcactagggccttatactactttaatattactttcttaaataacttggttatctttcaatggcagAAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCCCCACTGGTGTTGAACTCACTGGAGAGATTGCTGTTGACTTCCCAGAGAA
species | Vitis vinifera |
transcript | Vv06s0009g00680.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTATTCTGTCCCCAGAACTAGAACTGAGAGGCTTAGTCAATACGAAACAG AAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCCEST: gi|71855642|gb|DT004697.1|DT004697
genomic: GTATTCTGTCCCCAGAACTAGAACTGAGAGGCTTAGTCAATACGAAACAGgtaaagttgt ... tcaatggcagAAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCC
EST: GTATTCTGTCCCCAGAACTAGAACTGAGAGGCTTAGTCAATACGAAACAG AAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCCEST: gi|110371116|gb|EC934887.1|EC934887
genomic: GTATTCTGTCCCCAGAACTAGAACTGAGAGGCTTAGTCAATACGAAACAGgtaaagttgt ... tcaatggcagAAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCC
EST: GTATTCTGTCCCCAGAACTAGAACTGAGAGGCTTAGTCAATACGAAACAG AAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCC
genomic: GTATTCTGTCCCCAGAACTAGAACTGAGAGGCTTAGTCAATACGAAACAGgtaaagttgt ... tcaatggcagAAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCC
cttatactactttaatattactttcttaaataacttggttatctttcaatggcagAAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCCCCACTGGTGTTGAACTCACTGGAGAGATTGCTGTTGACTTCCCAGAGAA
aaataac putative branch site (score: 2)
ttatctttc putative PPT
tactttaatattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtatccaatcccattcccgacccattgcataaagtcactagggccttatactactttaatattactttcttaaataacttggttatctttcaatggcagAAAATGAAAAGATAAGATCAGCAGGTTCCATTTTGATCATCGGAGGAGGCCCCACTGGTGTTGAACTCACTGGAGAGATTGCTGTTGACTTCCCAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-gtatcca
- - - - - -ccattcc
- - - - - - - - - cgaccca
- - - - - - - - - - - - - - cataaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataac