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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttttctttttgaattttgattcttccctgagggatttcttgaataatgaggcatgtcaagagcattttattttgtttttcatgcttttttggatattgttgtcattgtgtttgaacaactgctggtaataattaccttttctgaccatgattcgtttatctttgttttgcagGTCATATCCTTTT

Basic information

species Vitis vinifera
transcript Vv06s0004g08410.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882570|gb|DT031625.1|DT031625
EST:     TTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: TTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|110425249|gb|EC991631.1|EC991631
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|71890099|gb|DT039154.1|DT039154
EST:     TTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: TTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|349833038|gb|FQ416416.1|FQ416416
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|110384285|gb|EC948713.1|EC948713
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|351014264|gb|FQ434853.1|FQ434853
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|351029971|gb|FQ430713.1|FQ430713
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgctggtaataattaccttttctgaccatgattcgtttatctttgttttgcagGTCATATCCTTTT
                     ttctgac  putative branch site (score: 2)
                                     tttatctttgtttt  putative PPT
        taataattacctttt  TA-rich tract