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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA

Basic information

species Vitis vinifera
transcript Vv06s0004g07940.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g60790.1 (Oryza sativa), 3'ss of exon 2
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgtttt--gtaattgatggaaacccttaaagaggttgtc-tccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
    || | |  |  || | |             | |||  |      | |     ||||   |  |   ||  | |   || ||| | ||  |  |  | ||||||| || || |||||||||| |||||||||||| |||||||| || ||  |  | || || || || || || ||  | ||| 
--gtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G40660.1 (Glycine max), 3'ss of exon 2
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatgga------aacccttaaagaggttgt---ctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
      | | |      |   ||||  |  || ||  |||| ||||||  | |  |         ||| ||  |    ||||           | | ||||    | ||||||| || || |||||||||||||||||||||||||| || || ||||| ||  | |||||||| ||||||||||| |||||  
-gtttttatttcactttctcttaaaccttcaattttttttttttttgttttaggcgtttcaattgacctttttacgctttgtgaataaaaaaatattattaaaaaacagGACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G06000.1 (Glycine max), 3'ss of exon 1
-ttccaatgtgttgtcaaccactaaaaatgaaacttagtttt--gttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
 ||    | | ||     |   ||    | ||  || ||     |  ||  | || | |      |     | || | | |  ||  |   | |   | | ||||||| |||||||||||||||||||||||||||||||| || || ||||| ||  | ||||||   ||||| |||          
gtttttttattttactttcttatacctttaaagttttgtgcaaggcatttcagttaaagtttttgcgctttgtggattttttttttcttcaaattaataacagGACAAGGCTATTAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGTTGGAAGCCTGT----------

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G39940.1 (Glycine max), 3'ss of exon 2
ttccaatgtgttgtcaac-cactaaaaatgaaacttagttttgttttgtaattg-atggaaaccc--ttaaagaggttgtc-tccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
         ||| | |   ||||       |   |   |||| |||| |  ||    || ||  |  |||||||  |||   |   ||     | |   | | ||||||| ||||| |||||||||||||||||||||||||| || || ||||| ||  | |||||||| || |||||||| || ||  
---------gttcttatttcactttcttcaaccttccttttttttttatttttatgcggcaattcaattaaagattttgagatttgtgaaaaaaattaataacagGACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTACGAAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 2
ttccaatgtgttgtcaaccactaaaaa--tgaaacttagttttgttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaa-agGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
 | |  | |  | |||    || |||   | ||| ||  |||| |   | |||| |   ||    ||   | | ||          |   || ||  ||| ||||||| ||||| |||||||||||||||||||||||||| || || ||||| ||  | ||||| || || |||||||| |||||  
gttcgttcttatttcactttcttaaacgttcaaatttttttttctgcggcaattcaattaatttttttttgcgatttgtaaaaaaataaaataataataacagGACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTTCAGGAGGCTTGTGTCTATGAAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G18200.1 (Glycine max), 3'ss of exon 2
------ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatg-gaaacccttaaa------gaggttgtctccttgttgtgattatgttaaa--gGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
      ||  | | | || | |  || ||         |||  ||     ||   |||  || ||  |  || ||           |  |   ||||  |   | ||| |||  |||||| || || ||||||||||| |||||||||||||| || || ||||| ||  | |||||||| ||||| ||||| |||||  
gtttttttttattttattatta-tcattatttcgctttctttcttccaccttcagatttgtgcgaggcatttcaattttcaacaactaaccttttgtgctcgctctgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaaga-----ggttgtctccttgttgtgattatgttaaa--gGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
         ||| | | | | |     |    |||  ||     ||   |||  ||  |  | ||  | |       ||  |   ||||  |      || |||  |||||| || || ||||||||||| |||||||||||||| || || ||||| ||  | |||||||| ||||| ||||| |||||  
---------gttattatctatttcgcttt---cttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G38950.1 (Glycine max), 3'ss of exon 2
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
       ||  | |  |  | ||   ||   ||||  ||     ||  ||||  | |        |      ||   |        | |     | | ||||||| || || ||||||||| |||| ||||||||||| || || ||||| ||  | |||||||| ||||||||||| |||||  
-------gttgtttttattattatttatttcactttcttccaccttcaaattttttgtgcgaagcatttcaattaattgaaaaaaataaaataataacagGACAAGGCCATCAAGAGGTTTTTGGTTAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 3'ss of exon 2
-----ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
      ||       || ||  |  | |  ||| || ||    |   |  | |  | |||    |       |||  ||||     |  | | | | ||  | ||||||| || |||||||||||  | |||||||||||||||||||| |||||| || | ||||| || |||||| | || |||||  
gtactctcttcctccttctcttctccaatcaatcaatctccagtaactcctatg-tggattttgatt-----agatcttgtggtggtaatataaatttgg-atagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 2
----------ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaatt-gatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
          |  |  | | || |||| || | ||  |  |   || || |  | |||| || |||   |   |||   | ||||       | |  | ||| ||  | ||||||| || |||||||||||  | |||||||||||||||||||| |||||| || | ||||| || |||||| | || |||||  
gtactctctttcaccttctcttctcaatcaatcaatctccag--taattcttatgtgtattttgatttga--tcttgtggtggtt------ctataataatt-tgggatagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G56340.1 (Arabidopsis thaliana), 3'ss of exon 2
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
 | || | |  |    |  |  |           ||| ||||| ||   |||||   ||    |  |   |||| |  |  | ||||       | | ||||||| || |||||||| ||| | || ||||||||||| ||||| |||||| || | ||||| ||||||||| | || || ||  
gttcattctcctac--ataatcatttcccggttctagatttgtcttaagattga--aaatgtatcgatctggttttggctctcttgt-------tgatagGACAAGGCGATTAAGAGATTTATCGTAAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S270_77V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattga--tggaaacccttaaagaggttgtctccttgttgt--gattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
                                                  ||   |   | |   | |   |      |  | ||     ||| || |   |    |   |    |||  ||    |     || |  |  ||||   |   ||||||| ||  | ||| | ||||||||| | ||||| |||||||| || || |||||||| |||||||||||||| || || ||  
gttggtgttgttttggtctcgtttttttaggtttgggtttgcccggttaattatgaacagatcctatctgttcctcgagggatttctccatgtcttttgtctaccctaatagggtttagggataacgagaggttatcatttgattgc-tcgcagGACAAGGCGGTGAAGCGTTTTCTGGTGCGTAACATCGTGGAGCAGGCCGCCGTTCGTGACGTGCAAGAAGCTTGCGTGTACGACG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S375_10V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------------------------------ttccaatgtgttgtcaaccactaaaa-atgaaacttagttttgttttgtaat-tgatggaaacccttaaagaggttgtctccttgttgtgatta----tgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
                                                               | || || | || | |  |  |     |||| | |      |||       | |  ||  |      | |   | |  | | |  || |||  |    |  |  ||||||| ||  | ||| ||||| ||||  | |||||||| ||||| ||||||||||||||||||||||| || ||||| || ||  
gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S169_19V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatgga--aacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
                                                                  |   |||  | ||||    ||||    | ||||| |  | |||    |  ||     |  |    ||| |   | ||     | ||  |||  || ||  ||||||| ||  | ||| ||||| ||||| | |||||||| ||||| |||||||| |||||||||||||||||||| || || ||| 
gttgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaattggctgatcagttaagaatcaggtgtcgtaaactactg-tcaaactcaagtatgtgccatttttatcacattaggatttagaatcgctgatcattggtgttga--attttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402791|gb|EC963464.1|EC963464
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110396111|gb|EC961787.1|EC961787
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|30127855|gb|CB913194.1|CB913194
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|77583984|gb|DV221033.1|DV221033
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|161708810|gb|FC060895.1|FC060895
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|22010984|gb|BQ796018.1|BQ796018
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110368524|gb|EC932505.1|EC932505
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|27580824|gb|CB003519.1|CB003519
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|87586799|gb|DY474928.1|DY474928
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110725555|gb|EE102188.1|EE102188
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110703804|gb|EE080969.1|EE080969
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|46917920|gb|CN547249.1|CN547249
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110716711|gb|EE091932.1|EE091932
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110725961|gb|EE102968.1|EE102968
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|349827973|gb|FQ422841.1|FQ422841
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|30296841|gb|CB973635.1|CB973635
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110729992|gb|EE106564.1|EE106564
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110387639|gb|EC952322.1|EC952322
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|34320245|gb|CF372999.1|CF372999
EST:     CCCACGTC-AGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110382458|gb|EC946749.1|EC946749
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110379594|gb|EC944803.1|EC944803
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|71867612|gb|DT016667.1|DT016667
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110412062|gb|EC977796.1|EC977796
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|37185071|gb|CF604424.1|CF604424
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110397683|gb|EC963502.1|EC963502
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|22008753|gb|BQ793787.1|BQ793787
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110688461|gb|EE067037.1|EE067037
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110366612|gb|EC930524.1|EC930524
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110386545|gb|EC951146.1|EC951146
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110381094|gb|EC946410.1|EC946410
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110701330|gb|EE078774.1|EE078774
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|77587578|gb|DV222954.1|DV222954
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110701297|gb|EE078703.1|EE078703
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110714403|gb|EE091268.1|EE091268
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|87586382|gb|DY474670.1|DY474670
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|27580159|gb|CB002854.1|CB002854
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|37188237|gb|CF607586.1|CF607586
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110396512|gb|EC962202.1|EC962202
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110689564|gb|EE065900.1|EE065900
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110369266|gb|EC933420.1|EC933420
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110385038|gb|EC949521.1|EC949521
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTTTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|77586811|gb|DV222547.1|DV222547
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110367394|gb|EC931326.1|EC931326
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|30296917|gb|CB973711.1|CB973711
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
EST: gi|110730170|gb|EE106942.1|EE106942
EST:     GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG                         GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT
genomic: GCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttc ... tatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA
   aattgat  putative branch site (score: 4)
                                           attatgttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaagaggttgtctccttgttgtgattatgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- ccaatgt
- - - - - - -tcaacca
- - - - - - - - - - -taaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttaa