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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcataattaactagccttttccttttacaaaatatatcatacatgactccagaattaatcattctttggcatggtttttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACAGCTAGCCTCTCTGGTGCCAACAACAACATCCCCCCTCCCACTTCTAGCC

Basic information

species Vitis vinifera
transcript Vv06s0004g07770.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864984|gb|DT014039.1|DT014039
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|352787091|gb|FQ476124.1|FQ476124
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|352794906|gb|FQ477016.1|FQ477016
EST:     TCTCCTGTGCCGATATCATANCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCCAGCTTGGAAGGAGAGATTTCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|352787014|gb|FQ476047.1|FQ476047
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|294964613|gb|GW838416.1|GW838416
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATT
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATT
EST: gi|110419121|gb|EC985323.1|EC985323
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatcatacatgactccagaattaatcattctttggcatggtttttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACAGCTAGCCTCTCTGGTGCCAACAACAACATCCCCCCTCCCACTTCTAGCC
                     aattaat  putative branch site (score: 3)
                                           tttttat  putative PPT
                     aattaatcattcttt  TA-rich tract