Sequence
atgc intronic sequence ATGC exonic sequence...tgtaaaaaatcaactttacgccctggtgatggtaattacatatcaatgttaaacccttcttctgtatgacttgcattgatcaacaaatttctgtttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G14780.1 (Glycine max), 3'ss of exon 2
tgtaaaaaatcaactttacgccctggtgatggtaattacatatcaatgttaaacccttc-ttctgtatgacttgcatt-gatcaacaaatttctgttt-gcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAG
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---ttaaatctatcattttacttttgtgccattaagaatgaaacgtgacaccacctctcactaaatttgatgtttatttggtaaatgttttcctgttttgtagCTTTTTAGCGTTATCCACTGGAATTATATATAGTTACTATGCAGTAATACTAAAGGTTGATGAGGAAGAGTTTGGCGGTCATGGAGCCCTCCTTCAAGAG
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G29020.1 (Arabidopsis thaliana), 3'ss of exon 2
tgtaaaaaatcaactttacgccctggtgatggta-attacatatca---atgttaaaccc-ttcttctgtatgacttgcattgatcaacaaatttctgtttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAG
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---agattttgagttatcggttacaatcatactacatagcaggcctttcgtgttgagttggtttgtcttaacaagtagcatcgttgactgtaaaatt--tggcagATTTCTTGCAATCTCCTCTGGCATAGTATATGGTTACTATGCATTGGTTCTAAAGATCGATGAAGAAGACTTCGGTGGTCACGCAGCTTTGCTCCAGGAC
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G59410.1 (Arabidopsis thaliana), 3'ss of exon 2
tgtaaaaaatcaactttacgccctggtgatggtaattacatatcaatgttaaacccttc---ttctgtatgact---tgcattgatcaacaaatttctg---tttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAG
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-------catcgacccaaagccgtagattcatggatcacagttctttg--aaacctcttaagtttggcaaaactttgtgatgtaatgaactaatgatgggattttgcagGTTTTTGGCGATATCCTCTGGGATAGTTTATGGTTACTACGCAATGATTCTCAAGGTTGATGAAGAAGATTTCGGAGGCCACGCAGCTTTACTCCAAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110365966|gb|EC929552.1|EC929552EST: GGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTT ATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACT
genomic: GGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTTgtaagttgat ... ctgtttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttaaacccttcttctgtatgacttgcattgatcaacaaatttctgtttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAG
cattgat putative branch site (score: 4)
tttctgttt putative PPT
aacaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaaaaaatcaactttacgccctggtgatggtaattacatatcaatgttaaacccttcttctgtatgacttgcattgatcaacaaatttctgtttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -aaaaaat
- - - - - - - - - cgccctg
- - - - - - - - - - - - -gtgatgg
- - - - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaat