Sequence
atgc intronic sequence ATGC exonic sequencegtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G14880.1 (Glycine max), 3'ss of exon 1
gtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaag-gcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
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-------------------------gtaagatagatatctggacggttttatttccaatattt----ttgttcctacagtgattagctagtacttttcaatttc--tattgatttaccgtg-agtctactgtattgt-aatgtttagGCTGGATTTGCTGGGGATGATGCTCCAAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G04360.1 (Glycine max), 3'ss of exon 1
--------------------gtatcatatcaggattatca---tttgtt--tagaaataata-acctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgat--gcaatgc-caacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
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gtaaaaaaaataaaatacgaggatgattttattatttccaaattttgcttgtagaagtgatttggatagtatgttcttttttgcttggcgtactttgacacatgcatgtgaagggtaccttttgatttgacc--taatttactctggattgaaatttgcaatttgcaatgtgtagGCTGGTTTTGCTGGAGATGATGCTCCAAGGGCAGTGTTTCCTAGCATTGTTGGTCGGCCACGTCACACCGGTGTGATGGTTGGGATGGGGCAAAAGGATG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G06820.1 (Glycine max), 3'ss of exon 2
gtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
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-----------------------------gtaagatatctggatggttttattttcaatatttttgtttcctgc--agtgattgaccagtacttttcaatttc--tattgatttactg---agtctactgtattgc-aatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G41060.1 (Glycine max), 3'ss of exon 1
-----gtatcatatcaggattatcat-ttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
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gttaaaaaaattacgaggatgattttattatttccaaattttgcatgtagaagtgatttt---gttttgcttgccgtactttgacacatgcatgagaag-actaat-ttactgt--gagtgttttgcaatttgctatg---------tctagGCTGGTTTTGCTGGAGATGATGCTCCGAGGGCAGTGTTTCCAAGCATTGTTGGTCGGCCACGTCACACCGGTGTGATGGTTGGGATGGGGCAAAAGGATG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S381_21V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
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---------------------------------------ctgcattcttagatttgtagtttgctaccttaa--tgcagtccttcgcgttaggcgtcagttgttgtggaagattgatccaaaaa-tggtgca-tgtaa---tgcagGCCGGTTTCGCGGGAGACGATGCTCCCCGCGCTGTGTTTCCCAGCATCGTCGGACGGCCAAGGCACACTGGTGTGATGGTGGGCATGGGACAGAAGGACG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S381_18V6.2 (Physcomitrella patens), 3'ss of exon 2
gtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattc-actgacatcactgttgaattgttttttggtctgatgcaatgccaacctt-tagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
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----------------------------------------------gtagtat-caaatctccacaaccg-tcttctgtgtctaggtcatgttggacctgtgtttaggccaatcaacatgtaggagtaatatggtgcatgtaatgcagGCCGGTTTCGCGGGAGATGATGCTCCCCGCGCTGTGTTTCCCAGCATCGTCGGACGGCCAAGGCACACTGGTGTGATGGTGGGCATGGGACAGAAGGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110387986|gb|EC952697.1|EC952697EST: AAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAG GCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTG
genomic: AAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatcatatc ... caacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
ccttt CT-rich tract
ttgaattgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTGGGTCGTCCACGGCACACTGGTGTGATGGTTGGGATGGGCCAGAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG